CRAN Package Check Results for Package AMAP.Seq

Last updated on 2019-07-16 00:47:58 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 2.63 26.76 29.39 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 2.03 20.82 22.85 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 38.43 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 33.04 NOTE
r-devel-windows-ix86+x86_64 1.0 6.00 37.00 43.00 NOTE
r-patched-linux-x86_64 1.0 2.67 26.34 29.01 NOTE
r-patched-solaris-x86 1.0 54.80 NOTE
r-release-linux-x86_64 1.0 2.57 26.14 28.71 NOTE
r-release-windows-ix86+x86_64 1.0 5.00 57.00 62.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 35.00 39.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    EXP.step: no visible global function definition for 'rgamma'
    EXP.step: no visible global function definition for 'rnorm'
    MAX.step: no visible global function definition for 'uniroot'
    Norm.GMedian: no visible binding for global variable 'median'
    RNASeq.Data.Gene: no visible binding for global variable 'quantile'
    decom.initial: no visible global function definition for 'kmeans'
    decom.initial: no visible global function definition for 'quantile'
    decom.initial: no visible global function definition for 'var'
    dispersion.nb.QL: no visible binding for global variable 'quantile'
    est.mu.nb.mle: no visible global function definition for 'runif'
    est.v.nb.QL: no visible global function definition for 'runif'
    pdf2grid: no visible global function definition for 'dnorm'
    pdf2grid: no visible global function definition for 'dgamma'
    prior.grid: no visible global function definition for 'sd'
    prior.grid: no visible global function definition for 'dnorm'
    test.AMAP: no visible global function definition for 'rgamma'
    test.AMAP: no visible global function definition for 'rnorm'
    test.AMAP: no visible global function definition for 'quantile'
    Undefined global functions or variables:
     dgamma dnorm kmeans median quantile rgamma rnorm runif sd uniroot var
    Consider adding
     importFrom("stats", "dgamma", "dnorm", "kmeans", "median", "quantile",
     "rgamma", "rnorm", "runif", "sd", "uniroot", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'MGN.EM.Rd':
     \usage lines wider than 90 characters:
     MGN.EM(data, nK, p0 = NULL, d0 = 0, nK0 = 0, iter.max = 10, print.steps = FALSE, MGN0 = NULL, model = NULL, nMC = 10000)
    
    Rd file 'test.AMAP.Rd':
     \usage lines wider than 90 characters:
     test.AMAP(data, MGN, del.lim = NULL, FC = NULL, print.steps = FALSE, Integration = "MC",nMC=NULL)
     \examples lines wider than 100 characters:
     data("SimuHapMap") # a matrix 'counts' storing simulated data with 10000 genes, two treatments, of which each has 5 replicates
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64