CRAN Package Check Results for Package HTSSIP

Last updated on 2019-06-26 00:47:29 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.0 6.65 314.39 321.04 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 1.4.0 5.94 243.84 249.78 OK --no-vignettes
r-devel-linux-x86_64-fedora-clang 1.4.0 348.06 NOTE --no-vignettes
r-devel-linux-x86_64-fedora-gcc 1.4.0 344.85 NOTE --no-vignettes
r-devel-windows-ix86+x86_64 1.4.0 22.00 339.00 361.00 OK --no-vignettes
r-patched-linux-x86_64 1.4.0 6.41 309.33 315.74 OK --no-vignettes
r-patched-solaris-x86 1.4.0 4329.80 WARN
r-release-linux-x86_64 1.4.0 5.32 306.60 311.92 OK --no-vignettes
r-release-windows-ix86+x86_64 1.4.0 14.00 420.00 434.00 OK --no-vignettes
r-release-osx-x86_64 1.4.0 ERROR
r-oldrel-windows-ix86+x86_64 1.4.0 9.00 283.00 292.00 OK --no-vignettes
r-oldrel-osx-x86_64 1.4.0 NOTE

Check Details

Version: 1.4.0
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘igraph’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.4.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘igraph’
     All declared Imports should be used.
Flavors: r-patched-solaris-x86, r-oldrel-osx-x86_64

Version: 1.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘BD_shifts.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: phyloseq
    --- finished re-building ‘BD_shifts.Rmd’
    
    --- re-building ‘HTSSIP_intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘HTSSIP_intro.Rmd’
    
    --- re-building ‘HTSSIP_sim.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘HTSSIP_sim.Rmd’
    
    --- re-building ‘MW_HR_SIP.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required namespace: DESeq2
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    converting counts to integer mode
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
     Note: levels of factors in the design contain characters other than
     letters, numbers, '_' and '.'. It is recommended (but not required) to use
     only letters, numbers, and delimiters '_' or '.', as these are safe characters
     for column names in R. [This is a message, not an warning or error]
    --- finished re-building ‘MW_HR_SIP.Rmd’
    
    --- re-building ‘beta_diversity_ordinations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: phyloseq
    --- finished re-building ‘beta_diversity_ordinations.Rmd’
    
    --- re-building ‘heavy_SIP.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘heavy_SIP.Rmd’
    
    --- re-building ‘qSIP.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 96-99 (qSIP.Rmd)
    Error: processing vignette 'qSIP.Rmd' failed with diagnostics:
    cannot coerce class 'structure("sample_data", package = "phyloseq")' to a data.frame
    --- failed re-building ‘qSIP.Rmd’
    
    --- re-building ‘quant_incorp.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘quant_incorp.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘qSIP.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.4.0
Check: package dependencies
Result: ERROR
    Packages required but not available: 'DESeq2', 'phyloseq'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64