CRAN Package Check Results for Package NetRep

Last updated on 2019-07-16 00:48:17 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 123.91 143.81 267.72 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 102.21 113.33 215.54 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 366.32 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 358.36 OK
r-devel-windows-ix86+x86_64 1.2.1 354.00 242.00 596.00 OK
r-patched-linux-x86_64 1.2.1 122.33 146.21 268.54 OK
r-patched-solaris-x86 1.2.1 283.40 ERROR
r-release-linux-x86_64 1.2.1 117.07 145.53 262.60 OK
r-release-windows-ix86+x86_64 1.2.1 281.00 248.00 529.00 OK
r-release-osx-x86_64 1.2.1 NOTE
r-oldrel-windows-ix86+x86_64 1.2.1 362.00 225.00 587.00 OK
r-oldrel-osx-x86_64 1.2.1 NOTE

Check Details

Version: 1.2.1
Check: installed package size
Result: NOTE
     installed size is 8.8Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 6.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: combineAnalyses
    > ### Title: Combine results of multiple permutation procedures
    > ### Aliases: combineAnalyses
    > ### Keywords: internal
    >
    > ### ** Examples
    >
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > pres1 <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test", nThreads=2
    + )
    [2019-07-15 10:20:59 BST] Validating user input...
    [2019-07-15 10:20:59 BST] Checking matrices for problems...
    [2019-07-15 10:20:59 BST] Input ok!
    [2019-07-15 10:20:59 BST] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2019-07-15 10:20:59 BST] Pre-computing network properties in dataset
     "discovery"...
    [2019-07-15 10:20:59 BST] Calculating observed test statistics...
    [2019-07-15 10:20:59 BST] Generating null distributions from 1000
     permutations using 2 threads...
    
    
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     *** caught segfault ***
    address 6d47fe17, cause 'memory not mapped'
    
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Flavor: r-patched-solaris-x86

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
     *** caught segfault ***
    address 26849a95, cause 'memory not mapped'
Flavor: r-patched-solaris-x86