CRAN Package Check Results for Maintainer ‘Aditya M. Rao <adityamr at stanford.edu>’

Last updated on 2019-07-16 00:48:42 CEST.

Package ERROR WARN NOTE OK
MetaIntegrator 1 1 3 7

Package MetaIntegrator

Current CRAN status: ERROR: 1, WARN: 1, NOTE: 3, OK: 7

Version: 2.0.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’ ‘readr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-oldrel-osx-x86_64

Version: 2.0.0
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'multtest', 'Biobase', 'preprocessCore', 'GEOquery', 'GEOmetadb',
     'snplist', 'AnnotationDbi'
    
    Packages suggested but not available for checking:
     'BiocStyle', 'BiocGenerics'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 2.0.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-osx-x86_64

Version: 2.0.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 26-27 (MetaIntegrator.Rmd)
    Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
    there is no package called 'BiocStyle'
    Execution halted
Flavor: r-oldrel-osx-x86_64