CRAN Package Check Results for Package afex

Last updated on 2019-06-20 00:50:36 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.23-0 13.05 346.33 359.38 WARN
r-devel-linux-x86_64-debian-gcc 0.23-0 11.19 263.51 274.70 WARN
r-devel-linux-x86_64-fedora-clang 0.23-0 425.22 OK
r-devel-linux-x86_64-fedora-gcc 0.23-0 416.60 OK
r-devel-windows-ix86+x86_64 0.23-0 54.00 607.00 661.00 WARN
r-patched-linux-x86_64 0.23-0 13.58 337.98 351.56 WARN
r-patched-solaris-x86 0.23-0 806.50 NOTE
r-release-linux-x86_64 0.23-0 11.54 338.73 350.27 WARN
r-release-windows-ix86+x86_64 0.23-0 49.00 563.00 612.00 WARN
r-release-osx-x86_64 0.23-0 OK
r-oldrel-windows-ix86+x86_64 0.23-0 20.00 496.00 516.00 OK
r-oldrel-osx-x86_64 0.23-0 OK

Check Details

Version: 0.23-0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'afex_anova_example.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    --- finished re-building 'afex_anova_example.Rmd'
    
    --- re-building 'afex_mixed_example.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:MASS':
    
     select
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'tidyr'
    
    The following object is masked from 'package:Matrix':
    
     expand
    
    Loading required package: RColorBrewer
    --- finished re-building 'afex_mixed_example.Rmd'
    
    --- re-building 'afex_plot_introduction.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    NOTE: Results may be misleading due to involvement in interactions
    NOTE: Results may be misleading due to involvement in interactions
    --- finished re-building 'afex_plot_introduction.Rmd'
    
    --- re-building 'afex_plot_supported_models.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    Quitting from lines 231-233 (afex_plot_supported_models.Rmd)
    Error: processing vignette 'afex_plot_supported_models.Rmd' failed with diagnostics:
    Please use `data_frame()` or `new_data_frame()` instead of `data.frame()` for better performance. See the vignette "ggplot2 internal programming guidelines" for details.
    --- failed re-building 'afex_plot_supported_models.Rmd'
    
    --- re-building 'introduction-mixed-models.pdf.asis' using asis
    --- finished re-building 'introduction-mixed-models.pdf.asis'
    
    SUMMARY: processing the following file failed:
     'afex_plot_supported_models.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.23-0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'afex_anova_example.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    --- finished re-building 'afex_anova_example.Rmd'
    
    --- re-building 'afex_mixed_example.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:MASS':
    
     select
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'tidyr'
    
    The following object is masked from 'package:Matrix':
    
     expand
    
    Loading required package: RColorBrewer
    --- finished re-building 'afex_mixed_example.Rmd'
    
    --- re-building 'afex_plot_introduction.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    NOTE: Results may be misleading due to involvement in interactions
    NOTE: Results may be misleading due to involvement in interactions
    --- finished re-building 'afex_plot_introduction.Rmd'
    
    --- re-building 'afex_plot_supported_models.Rmd' using rmarkdown
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    
    Attaching package: 'cowplot'
    
    The following object is masked from 'package:ggplot2':
    
     ggsave
    
    Quitting from lines 231-233 (afex_plot_supported_models.Rmd)
    Error: processing vignette 'afex_plot_supported_models.Rmd' failed with diagnostics:
    Please use `data_frame()` or `new_data_frame()` instead of `data.frame()` for better performance. See the vignette "ggplot2 internal programming guidelines" for details.
    --- failed re-building 'afex_plot_supported_models.Rmd'
    
    --- re-building 'introduction-mixed-models.pdf.asis' using asis
    --- finished re-building 'introduction-mixed-models.pdf.asis'
    
    SUMMARY: processing the following file failed:
     'afex_plot_supported_models.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.23-0
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     doc 2.9Mb
     extdata 1.9Mb
Flavor: r-patched-solaris-x86