CRAN Package Check Results for Package clusterGenomics

Last updated on 2019-09-20 00:47:31 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 2.07 28.12 30.19 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.90 22.37 24.27 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 37.30 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 35.97 NOTE
r-devel-windows-ix86+x86_64 1.0 7.00 53.00 60.00 NOTE
r-patched-linux-x86_64 1.0 1.80 27.96 29.76 NOTE
r-patched-solaris-x86 1.0 60.50 NOTE
r-release-linux-x86_64 1.0 2.04 27.88 29.92 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 55.00 59.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 3.00 38.00 41.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    doHclust: no visible global function definition for 'hclust'
    doHclust: no visible global function definition for 'cutree'
    doKmeans: no visible global function definition for 'kmeans'
    gap: no visible global function definition for 'hasArg'
    gap: no visible global function definition for 'modifyList'
    gap: no visible binding for global variable 'sd'
    get.threshold: no visible global function definition for 'hclust'
    get.threshold: no visible global function definition for 'quantile'
    getDist: no visible global function definition for 'dist'
    getDist: no visible global function definition for 'as.dist'
    getDist: no visible global function definition for 'cor'
    part: no visible global function definition for 'modifyList'
    plotColorRange: no visible global function definition for 'plot'
    plotColorRange: no visible global function definition for 'abline'
    plotColorRange: no visible global function definition for 'axis'
    plotColorRange: no visible global function definition for 'rgb'
    plotColorRange: no visible global function definition for 'polygon'
    plotColorbarCol: no visible global function definition for 'polygon'
    plotColorbarRow: no visible global function definition for 'polygon'
    plotForkCol: no visible global function definition for 'lines'
    plotForkRow: no visible global function definition for 'lines'
    plotHeatmap: no visible global function definition for 'plot'
    plotHeatmap: no visible global function definition for 'rgb'
    plotHeatmap: no visible global function definition for 'plot.xy'
    plotHeatmap: no visible global function definition for 'xy.coords'
    plotHeatmap: no visible global function definition for 'polygon'
    sim: no visible global function definition for 'runif'
    Undefined global functions or variables:
     abline as.dist axis cor cutree dist hasArg hclust kmeans lines
     modifyList plot plot.xy polygon quantile rgb runif sd xy.coords
    Consider adding
     importFrom("grDevices", "rgb", "xy.coords")
     importFrom("graphics", "abline", "axis", "lines", "plot", "plot.xy",
     "polygon")
     importFrom("methods", "hasArg")
     importFrom("stats", "as.dist", "cor", "cutree", "dist", "hclust",
     "kmeans", "quantile", "runif", "sd")
     importFrom("utils", "modifyList")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64