CRAN Package Check Results for Maintainer ‘Ed Curry <e.curry at imperial.ac.uk>’

Last updated on 2019-05-20 00:48:25 CEST.

Package ERROR NOTE OK
ArrayBin 1 11
GABi 12
GESTr 12
LCA 12

Package ArrayBin

Current CRAN status: ERROR: 1, NOTE: 11

Version: 0.2
Check: R code for possible problems
Result: NOTE
    binarize.array: no visible binding for global variable 'sd'
    mskmeans: no visible global function definition for 'kmeans'
    Undefined global functions or variables:
     kmeans sd
    Consider adding
     importFrom("stats", "kmeans", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘SAGx’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Package GABi

Current CRAN status: NOTE: 12

Version: 0.1
Check: R code for possible problems
Result: NOTE
    crossover: no visible global function definition for 'runif'
    exchangeSols: no visible global function definition for 'runif'
    fps: no visible global function definition for 'runif'
    mutation: no visible global function definition for 'runif'
    plotBicluster: no visible global function definition for 'gray'
    plotBicluster: no visible global function definition for 'heatmap'
    reproduction: no visible global function definition for 'runif'
    Undefined global functions or variables:
     gray heatmap runif
    Consider adding
     importFrom("grDevices", "gray")
     importFrom("stats", "heatmap", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ArrayBin’
Flavor: r-release-osx-x86_64

Package GESTr

Current CRAN status: NOTE: 12

Version: 0.1
Check: R code for possible problems
Result: NOTE
    GESTr: no visible global function definition for 'rnorm'
    GESTr: no visible global function definition for 'sd'
    GESTr : <anonymous>: no visible global function definition for 'pnorm'
    TranSAM : magChange: no visible global function definition for 'median'
    TranSAM : dstat: no visible global function definition for 'sd'
    TranSAM: no visible binding for global variable 'sd'
    TranSAM: no visible global function definition for 'quantile'
    findReplicateGroups: no visible global function definition for 'qnorm'
    findReplicateGroups: no visible global function definition for 'sd'
    fitGMM : simulateData: no visible global function definition for
     'rnorm'
    fitGMM : simulateData: no visible global function definition for 'sd'
    fitGMM: no visible global function definition for 'median'
    fitGMM: no visible global function definition for 'ks.test'
    fitRockeDurbin: no visible global function definition for 'dist'
    fitRockeDurbin : findLowGenes: no visible global function definition
     for 'median'
    fitRockeDurbin : findLowGenes: no visible global function definition
     for 'mad'
    fitRockeDurbin: no visible binding for global variable 'sd'
    getMonotonicConfidences_multiclass: no visible global function
     definition for 'pnorm'
    getMonotonicConfidences_multiclass: no visible global function
     definition for 'sd'
    Undefined global functions or variables:
     dist ks.test mad median pnorm qnorm quantile rnorm sd
    Consider adding
     importFrom("stats", "dist", "ks.test", "mad", "median", "pnorm",
     "qnorm", "quantile", "rnorm", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1
Check: Rd line widths
Result: NOTE
    Rd file 'TranSAM.Rd':
     \usage lines wider than 90 characters:
     TranSAM(x,samples1,samples2,minChange=0.2,var_filter=0.01,maxFDR=1,changeStep=0.1,scoreFun="magChange")
     \examples lines wider than 100 characters:
     selected.columns <- sort(c(sample(1:ncol(ABIdata),30),which(colnames(ABIdata) %in% c("GSM194513","GSM194514","GSM194515","GSM194516","G ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package LCA

Current CRAN status: OK: 12