CRAN Package Check Results for Maintainer ‘Juri Reimand <juri.reimand at utoronto.ca>’

Last updated on 2020-07-11 00:49:20 CEST.

Package ERROR WARN OK
ActiveDriver 12
ActivePathways 2 1 5
mExplorer 12

Package ActiveDriver

Current CRAN status: OK: 12

Package ActivePathways

Current CRAN status: ERROR: 2, WARN: 1, OK: 5

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘activePathways-vignette.Rmd’ using rmarkdown
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    background gene set of 5615 genes derived from GMT file
    675 rows were removed from scores because they are not found in the background
    background gene set of 5614 genes derived from user-defined list
    35 terms were removed from gmt because they did not make the geneset.filter
    676 rows were removed from scores because they are not found in the background
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    background gene set of 7717 genes derived from GMT file
    35 terms were removed from gmt because they did not make the geneset.filter
    91 rows were removed from scores because they are not found in the background
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'activePathways-vignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘activePathways-vignette.Rmd’
    
    --- re-building ‘enrichmentMap-vignette.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'enrichmentMap-vignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘enrichmentMap-vignette.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘activePathways-vignette.Rmd’ ‘enrichmentMap-vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-windows-ix86+x86_64

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘EmpiricalBrownsMethod’
Flavor: r-oldrel-osx-x86_64

Version: 1.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [18s/8s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     6. EmpiricalBrownsMethod::empiricalBrownsMethod
     7. base::getExportedValue(pkg, name)
     8. base::asNamespace(ns)
     9. base::getNamespace(ns)
     10. base::loadNamespace(name)
     11. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     12. base:::withOneRestart(expr, restarts[[1L]])
     13. base:::doWithOneRestart(return(expr), restart)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 71 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: Merged p-values are correct (@test_merge_p_values.r#43)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64

Package mExplorer

Current CRAN status: OK: 12