CRAN Package Check Results for Maintainer ‘Scott Chamberlain <myrmecocystus at gmail.com>’

Last updated on 2019-08-23 00:48:51 CEST.

Package FAIL ERROR WARN NOTE OK
analogsea 1 11
bold 2 10
brranching 12
ccafs 12
ckanr 12
conditionz 12
cowsay 2 10
crul 12
discgolf 12
elastic 1 11
etseed 12
fauxpas 5 7
finch 2 3 7
fulltext 12
geoaxe 12
geojson 12
geojsonio 5 7
geojsonlint 12
getlandsat 12
gistr 12
hoardr 12
httpcode 12
httping 12
isdparser 5 7
jqr 12
lawn 12
mapr 5 7
mregions 12
natserv 12
oai 2 10
openadds 12
originr 5 7
pangaear 1 11
pleiades 12
randgeo 12
rbhl 12
rbison 12
rcrossref 1 11
rdatacite 1 11
rdpla 12
rdryad 12
request 12
rerddap 12
rgbif 12
ritis 12
rjsonapi 5 7
rnoaa 12
rnpn 12
rorcid 5 7
rphylopic 12
rplos 12
rredlist 12
rsnps 12
rvertnet 12
scrubr 12
sofa 1 11
solrium 1 1 10
spocc 12
taxize 1 5 6
traits 12
wellknown 12
worrms 12

Package analogsea

Current CRAN status: NOTE: 1, OK: 11

Version: 0.7.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ssh’
Flavor: r-patched-solaris-x86

Package bold

Current CRAN status: NOTE: 2, OK: 10

Version: 0.9.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘sangerseqR’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package brranching

Current CRAN status: OK: 12

Package ccafs

Current CRAN status: OK: 12

Package ckanr

Current CRAN status: OK: 12

Package conditionz

Current CRAN status: OK: 12

Package cowsay

Current CRAN status: WARN: 2, OK: 10

Version: 0.7.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'cowsay_tutorial.Rmd' using rmarkdown
    Quitting from lines 139-144 (cowsay_tutorial.Rmd)
    Error: processing vignette 'cowsay_tutorial.Rmd' failed with diagnostics:
    If you're on Windows, you can't use:
    anxiouscat
    fish
    grumpycat
    longcat
    longtailcat
    mushroom
    shortcat
    signbunny
    stretchycat
    --- failed re-building 'cowsay_tutorial.Rmd'
    
    SUMMARY: processing the following file failed:
     'cowsay_tutorial.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Package crul

Current CRAN status: OK: 12

Package discgolf

Current CRAN status: OK: 12

Package elastic

Current CRAN status: NOTE: 1, OK: 11

Version: 1.0.0
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     examples 4.2Mb
Flavor: r-patched-solaris-x86

Package etseed

Current CRAN status: OK: 12

Package fauxpas

Current CRAN status: NOTE: 5, OK: 7

Version: 0.2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘whisker’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package finch

Current CRAN status: ERROR: 2, NOTE: 3, OK: 7

Version: 0.3.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘rappdirs’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.3.0
Check: package dependencies
Result: ERROR
    Package required and available but unsuitable version: ‘EML’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Package fulltext

Current CRAN status: OK: 12

Package geoaxe

Current CRAN status: OK: 12

Package geojson

Current CRAN status: OK: 12

Package geojsonio

Current CRAN status: NOTE: 5, OK: 7

Version: 0.7.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'myfile.topojson'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.7.0
Check: installed package size
Result: NOTE
     installed size is 5.7Mb
     sub-directories of 1Mb or more:
     doc 1.5Mb
     examples 1.9Mb
     vign 1.4Mb
Flavor: r-patched-solaris-x86

Package geojsonlint

Current CRAN status: OK: 12

Package getlandsat

Current CRAN status: OK: 12

Package gistr

Current CRAN status: OK: 12

Package hoardr

Current CRAN status: OK: 12

Package httpcode

Current CRAN status: OK: 12

Package httping

Current CRAN status: OK: 12

Package isdparser

Current CRAN status: NOTE: 5, OK: 7

Version: 0.3.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 104 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package jqr

Current CRAN status: OK: 12

Package lawn

Current CRAN status: OK: 12

Package mapr

Current CRAN status: NOTE: 5, OK: 7

Version: 0.4.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 164 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package mregions

Current CRAN status: OK: 12

Package natserv

Current CRAN status: OK: 12

Package oai

Current CRAN status: NOTE: 2, OK: 10

Version: 0.2.2
Check: compiled code
Result: NOTE
    File ‘oai/libs/oai.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package openadds

Current CRAN status: OK: 12

Package originr

Current CRAN status: NOTE: 5, OK: 7

Version: 0.3.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 2 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package pangaear

Current CRAN status: ERROR: 1, OK: 11

Version: 0.8.0
Check: tests
Result: ERROR
     Running 'test-all.R' [3s/3s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library("testthat")
     > test_check("pangaear")
     Loading required package: pangaear
     Loading required namespace: jsonlite
     -- 1. Error: pg_search works and stuff, and stuff and things, also, it works (@t
     Reader error: control characters are not allowed: #9F at 41387
     1: vcr::use_cassette("pg_search", {
     aa <- pg_search(query = "water")
     bb <- pg_search(query = "water", count = 2)
     cc <- pg_search(query = "water", topic = "Oceans")
     dd <- pg_search(query = "water", mindate = "2013-06-01", maxdate = "2013-07-01")
     ee <- pg_search(query = "water", bbox = c(-124.2, 41.8, -116.8, 46.1))
     ff <- pg_search(query = "citation:Archer")
     }) at testthat/test-pg_search.r:4
     2: insert_cassette(name, record = record, match_requests_on = match_requests_on, update_content_length_header = update_content_length_header,
     allow_playback_repeats = allow_playback_repeats, serialize_with = serialize_with,
     persist_with = persist_with, preserve_exact_body_bytes = preserve_exact_body_bytes)
     3: Cassette$new(name = name, record = record, match_requests_on = match_requests_on,
     re_record_interval = NULL, tag = NULL, tags = NULL, update_content_length_header = update_content_length_header,
     decode_compressed_response = NULL, allow_playback_repeats = allow_playback_repeats,
     allow_unused_http_interactions = NULL, exclusive = NULL, serialize_with = serialize_with,
     persist_with = persist_with, preserve_exact_body_bytes = preserve_exact_body_bytes)
     4: .subset2(public_bind_env, "initialize")(...)
     5: self$http_interactions()
     6: HTTPInteractionList$new(interactions = {
     if (self$should_stub_requests()) {
     self$previously_recorded_interactions()
     }
     else {
     list()
     }
     }, request_matchers = vcr_configuration()$match_requests_on)
     7: .subset2(public_bind_env, "initialize")(...)
     8: self$previously_recorded_interactions()
     9: compact(lapply(self$deserialized_hash()[["http_interactions"]], function(z) {
     response <- VcrResponse$new(z$response$status, z$response$headers, z$response$body$string,
     self$cassette_opts)
     if (self$update_content_length_header)
     response$update_content_length_header()
     zz <- HTTPInteraction$new(request = Request$new(z$request$method, z$request$uri,
     z$request$body$string, z$request$headers), response = response)
     hash <- zz$to_hash()
     if (request_ignorer$should_be_ignored(hash$request))
     NULL
     else hash
     }))
     10: Filter(Negate(is.null), x)
     11: unlist(lapply(x, f))
     12: lapply(x, f)
     13: lapply(self$deserialized_hash()[["http_interactions"]], function(z) {
     response <- VcrResponse$new(z$response$status, z$response$headers, z$response$body$string,
     self$cassette_opts)
     if (self$update_content_length_header)
     response$update_content_length_header()
     zz <- HTTPInteraction$new(request = Request$new(z$request$method, z$request$uri,
     z$request$body$string, z$request$headers), response = response)
     hash <- zz$to_hash()
     if (request_ignorer$should_be_ignored(hash$request))
     NULL
     else hash
     })
     14: self$deserialized_hash()
     15: self$serializer$deserialize_path()
     16: yaml::yaml.load(str)
    
     -- 2. Error: pg_search paging works (@test-pg_search.r#30) --------------------
     Reader error: control characters are not allowed: #89 at 19087
     1: vcr::use_cassette("pg_search_pagination", {
     res1 <- pg_search(query = "florisphaera", count = 10)
     res2 <- pg_search(query = "florisphaera", count = 10, offset = 10)
     res3 <- pg_search(query = "florisphaera", count = 10, offset = 20)
     }) at testthat/test-pg_search.r:30
     2: insert_cassette(name, record = record, match_requests_on = match_requests_on, update_content_length_header = update_content_length_header,
     allow_playback_repeats = allow_playback_repeats, serialize_with = serialize_with,
     persist_with = persist_with, preserve_exact_body_bytes = preserve_exact_body_bytes)
     3: Cassette$new(name = name, record = record, match_requests_on = match_requests_on,
     re_record_interval = NULL, tag = NULL, tags = NULL, update_content_length_header = update_content_length_header,
     decode_compressed_response = NULL, allow_playback_repeats = allow_playback_repeats,
     allow_unused_http_interactions = NULL, exclusive = NULL, serialize_with = serialize_with,
     persist_with = persist_with, preserve_exact_body_bytes = preserve_exact_body_bytes)
     4: .subset2(public_bind_env, "initialize")(...)
     5: self$http_interactions()
     6: HTTPInteractionList$new(interactions = {
     if (self$should_stub_requests()) {
     self$previously_recorded_interactions()
     }
     else {
     list()
     }
     }, request_matchers = vcr_configuration()$match_requests_on)
     7: .subset2(public_bind_env, "initialize")(...)
     8: self$previously_recorded_interactions()
     9: compact(lapply(self$deserialized_hash()[["http_interactions"]], function(z) {
     response <- VcrResponse$new(z$response$status, z$response$headers, z$response$body$string,
     self$cassette_opts)
     if (self$update_content_length_header)
     response$update_content_length_header()
     zz <- HTTPInteraction$new(request = Request$new(z$request$method, z$request$uri,
     z$request$body$string, z$request$headers), response = response)
     hash <- zz$to_hash()
     if (request_ignorer$should_be_ignored(hash$request))
     NULL
     else hash
     }))
     10: Filter(Negate(is.null), x)
     11: unlist(lapply(x, f))
     12: lapply(x, f)
     13: lapply(self$deserialized_hash()[["http_interactions"]], function(z) {
     response <- VcrResponse$new(z$response$status, z$response$headers, z$response$body$string,
     self$cassette_opts)
     if (self$update_content_length_header)
     response$update_content_length_header()
     zz <- HTTPInteraction$new(request = Request$new(z$request$method, z$request$uri,
     z$request$body$string, z$request$headers), response = response)
     hash <- zz$to_hash()
     if (request_ignorer$should_be_ignored(hash$request))
     NULL
     else hash
     })
     14: self$deserialized_hash()
     15: self$serializer$deserialize_path()
     16: yaml::yaml.load(str)
    
     == testthat results ===========================================================
     [ OK: 28 | SKIPPED: 8 | WARNINGS: 0 | FAILED: 2 ]
     1. Error: pg_search works and stuff, and stuff and things, also, it works (@test-pg_search.r#4)
     2. Error: pg_search paging works (@test-pg_search.r#30)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Package pleiades

Current CRAN status: OK: 12

Package randgeo

Current CRAN status: OK: 12

Package rbhl

Current CRAN status: OK: 12

Package rbison

Current CRAN status: OK: 12

Package rcrossref

Current CRAN status: WARN: 1, OK: 11

Version: 0.9.2
Check: R files for syntax errors
Result: WARN
    Warnings in file 'R/crAddins.R':
     unable to translate '<U+25B2>' to native encoding
     unable to translate '<U+25BC>' to native encoding
Flavor: r-devel-windows-ix86+x86_64

Package rdatacite

Current CRAN status: ERROR: 1, OK: 11

Version: 0.4.2
Check: examples
Result: ERROR
    Running examples in 'rdatacite-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: dc_search
    > ### Title: DataCite Solr web service for search, facet, stats, and mlt
    > ### queries
    > ### Aliases: dc_search dc_facet dc_stats dc_mlt
    >
    > ### ** Examples
    >
    > library(crul)
    > url <- "https://search.datacite.org/api"
    > if (crul::HttpClient$new(url=url)$get()$success()) {
    +
    + # Search
    + ## various searches
    + ### containing laser
    + dc_search(q = "laser", fl=c('doi','publicationYear'), rows=5)
    +
    + ### containing laser and safety
    + dc_search(q = "laser safety", fl=c('doi','publicationYear'),
    + rows=5)
    +
    + ### containing laser and not medicine
    + dc_search(q = "laser -medicine", fl=c('doi',
    + 'publicationYear'), rows=5)
    +
    + }
    Error in curl::curl_fetch_memory(x$url$url, handle = x$url$handle) :
     OpenSSL SSL_read: SSL_ERROR_SYSCALL, errno 10054
    Calls: <Anonymous> -> <Anonymous> -> crul_fetch -> <Anonymous>
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Package rdpla

Current CRAN status: OK: 12

Package rdryad

Current CRAN status: OK: 12

Package request

Current CRAN status: OK: 12

Package rerddap

Current CRAN status: OK: 12

Package rgbif

Current CRAN status: OK: 12

Package ritis

Current CRAN status: OK: 12

Package rjsonapi

Current CRAN status: NOTE: 5, OK: 7

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘crul’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package rnoaa

Current CRAN status: OK: 12

Package rnpn

Current CRAN status: OK: 12

Package rorcid

Current CRAN status: NOTE: 5, OK: 7

Version: 0.5.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 7645 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package rphylopic

Current CRAN status: OK: 12

Package rplos

Current CRAN status: OK: 12

Package rredlist

Current CRAN status: OK: 12

Package rsnps

Current CRAN status: OK: 12

Package rvertnet

Current CRAN status: OK: 12

Package scrubr

Current CRAN status: OK: 12

Package sofa

Current CRAN status: FAIL: 1, OK: 11

Version: 0.3.0
Check: package dependencies
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-ix86+x86_64

Package solrium

Current CRAN status: FAIL: 1, NOTE: 1, OK: 10

Version: 1.0.2
Check: package dependencies
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-ix86+x86_64

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘roxygen2’
Flavor: r-release-osx-x86_64

Package spocc

Current CRAN status: OK: 12

Package taxize

Current CRAN status: FAIL: 1, NOTE: 5, OK: 6

Version: 0.9.8
Check: data for non-ASCII characters
Result: NOTE
     Note: found 1 marked UTF-8 string
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.9.8
Check: package dependencies
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-ix86+x86_64

Package traits

Current CRAN status: OK: 12

Package wellknown

Current CRAN status: OK: 12

Package worrms

Current CRAN status: OK: 12