CRAN Package Check Results for Package stepwise

Last updated on 2019-09-22 00:47:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3 4.69 19.54 24.23 WARN
r-devel-linux-x86_64-debian-gcc 0.3 3.18 15.77 18.95 WARN
r-devel-linux-x86_64-fedora-clang 0.3 31.49 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3 29.11 WARN
r-devel-windows-ix86+x86_64 0.3 23.00 37.00 60.00 OK
r-patched-linux-x86_64 0.3 3.38 19.29 22.67 OK
r-patched-solaris-x86 0.3 45.80 OK
r-release-linux-x86_64 0.3 3.13 19.82 22.95 OK
r-release-windows-ix86+x86_64 0.3 15.00 60.00 75.00 OK
r-release-osx-x86_64 0.3 ERROR
r-oldrel-windows-ix86+x86_64 0.3 13.00 39.00 52.00 OK
r-oldrel-osx-x86_64 0.3 ERROR

Check Details

Version: 0.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     init.c:95:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:100:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:63:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:64:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:142:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:132:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:153:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
     init.c:156:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     MaxChi.c:468:20: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict]
     Phylpro.c:457:24: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict]
     init.c:63:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:64:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:95:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:100:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:132:3: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:142:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:153:3: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
     init.c:156:3: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc

Version: 0.3
Check: compiled code
Result: NOTE
    File ‘stepwise/libs/stepwise.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3
Check: examples
Result: ERROR
    Running examples in ‘stepwise-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: maxchi
    > ### Title: Stepwise detection of recombination breakpoints using MaxChi
    > ### Aliases: maxchi
    > ### Keywords: htest
    >
    > ### ** Examples
    > demo(maxchi)
    
    
     demo(maxchi)
     ---- ~~~~~~
    
    > inputFile<- system.file("extdata", "simulinfile.txt", package = "stepwise")
    
    > breaks<-c(531,616,810)
    
    > WinHalfWidth<-30
    
    > permReps<-10
    
    > a<-maxchi(inputFile, breaks, WinHalfWidth, permReps)
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64