LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

Version: 0.99-5
Depends: R (≥ 2.14.0)
Imports: grid, genetics, snpStats
Suggests: rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2
Published: 2018-08-16
Author: Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Jinko Graham [aut]
Maintainer: Brad McNeney <mcneney at sfu.ca>
License: GPL-3
URL: http://stat.sfu.ca/statgen/research/ldheatmap.html
NeedsCompilation: no
Citation: LDheatmap citation info
Materials: ChangeLog
In views: Genetics
CRAN checks: LDheatmap results

Downloads:

Reference manual: LDheatmap.pdf
Vignettes: LDheatmap
LDheatmap adding tracks example
Package source: LDheatmap_0.99-5.tar.gz
Windows binaries: r-devel: LDheatmap_0.99-5.zip, r-release: LDheatmap_0.99-5.zip, r-oldrel: LDheatmap_0.99-5.zip
OS X binaries: r-release: not available, r-oldrel: LDheatmap_0.99-5.tgz
Old sources: LDheatmap archive

Reverse dependencies:

Reverse imports: synbreed

Linking:

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