PGRdup: Discover Probable Duplicates in Plant Genetic Resources Collections

Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

Depends: R (≥ 3.0.2)
Imports: data.table (≥ 1.9.3), igraph, stringdist (≥ 0.9.4), stringi, ggplot2, grid, gridExtra, methods, utils, stats
Suggests: diagram, wordcloud, microbenchmark, XML, knitr, rmarkdown
Published: 2018-01-13
Author: J. Aravind ORCID iD [aut, cre], J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], R. K. Tyagi [aut], ICAR-NBGPR [cph], Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)
Maintainer: J. Aravind <j.aravind at>
License: GPL-2 | GPL-3
Copyright: 2014-2018, ICAR-NBPGR
NeedsCompilation: yes
Citation: PGRdup citation info
Materials: README NEWS
CRAN checks: PGRdup results


Reference manual: PGRdup.pdf
Vignettes: Introduction
Package source: PGRdup_0.2.3.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: PGRdup_0.2.3.3.tgz
OS X Mavericks binaries: r-oldrel: PGRdup_0.2.3.2.tgz
Old sources: PGRdup archive


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