PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Version: 0.63.0
Depends: R (≥ 3.2.0), utils
Imports: R.methodsS3 (≥ 1.7.1), R.oo (≥ 1.21.0), R.utils (≥ 2.5.0), R.cache (≥ 0.12.0), matrixStats (≥ 0.52.2), aroma.light (≥ 2.4.0), DNAcopy (≥ 1.42.0), listenv (≥ 0.6.0), future (≥ 1.5.0), parallel
Suggests: Hmisc (≥ 3.16-0), R.rsp (≥ 0.41.0), R.devices (≥ 2.15.1), ggplot2 (≥ 2.2.1)
Published: 2017-06-28
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
BugReports: https://github.com/HenrikBengtsson/PSCBS/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/HenrikBengtsson/PSCBS
NeedsCompilation: no
Citation: PSCBS citation info
Materials: NEWS
CRAN checks: PSCBS results

Downloads:

Reference manual: PSCBS.pdf
Vignettes: Total copy-number segmentation using CBS
Parent-specific copy-number segmentation using Paired PSCBS
Package source: PSCBS_0.63.0.tar.gz
Windows binaries: r-devel: PSCBS_0.63.0.zip, r-release: PSCBS_0.63.0.zip, r-oldrel: PSCBS_0.63.0.zip
OS X El Capitan binaries: r-release: PSCBS_0.62.0.tgz
OS X Mavericks binaries: r-oldrel: PSCBS_0.63.0.tgz
Old sources: PSCBS archive

Reverse dependencies:

Reverse imports: aroma.cn, aroma.core
Reverse suggests: jointseg

Linking:

Please use the canonical form https://CRAN.R-project.org/package=PSCBS to link to this page.