castor: Efficient Phylogenetics on Large Trees

Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.

Version: 1.4.1
Depends: Rcpp (≥ 0.12.10)
Imports: parallel, naturalsort, stats, nloptr
LinkingTo: Rcpp
Published: 2019-06-15
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca at zoology.ubc.ca>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: castor citation info
CRAN checks: castor results

Downloads:

Reference manual: castor.pdf
Package source: castor_1.4.1.tar.gz
Windows binaries: r-devel: castor_1.4.1.zip, r-release: castor_1.4.1.zip, r-oldrel: castor_1.4.0.zip
OS X binaries: r-release: castor_1.4.1.tgz, r-oldrel: castor_1.4.1.tgz
Old sources: castor archive

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