liayson: Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes

Given an RNA-seq derived cell-by-gene matrix and an DNA-seq derived copy number segmentation, LIAYSON predicts the number of clones present in a tumor, their size, the copy number profile of each clone and the clone membership of each single cell (Andor, N. & Lau, B., et al. (2018) <doi:10.1101/445932>).

Version: 1.0.2
Depends: R (≥ 3.0)
Imports: phangorn, RColorBrewer, ape, parallel, plyr, matlab, biomaRt, distances, arules, e1071, proxy, gplots, methods
Suggests: mclust, fpc, NbClust, modeest, pastecs, vegan
Published: 2019-04-28
Author: Noemi Andor
Maintainer: Noemi Andor <liayson.scRNA.R at gmail.com>
License: GPL-2
URL: https://github.com/noemiandor/liayson, https://groups.google.com/d/forum/liayson
NeedsCompilation: no
Materials: NEWS
CRAN checks: liayson results

Downloads:

Reference manual: liayson.pdf
Vignettes: liayson
Package source: liayson_1.0.2.tar.gz
Windows binaries: r-devel: liayson_1.0.2.zip, r-release: liayson_1.0.2.zip, r-oldrel: liayson_1.0.2.zip
OS X binaries: r-release: not available, r-oldrel: liayson_1.0.2.tgz
Old sources: liayson archive

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