momentuHMM Travis-CI Build Status License: GPL v3 Downloads

R package for Maximum likelihood analysis Of animal MovemENT behavior Using multivariate Hidden Markov Models

Get started with the vignette: Guide to using momentuHMM

Installation instructions

CRAN release

The package is available at CRAN_Status_Badge. To install it:

install.packages("momentuHMM")

Install from Github

To install the latest (stable) version of the package from Github: Travis-CI Build Status

library(devtools)
install_github("bmcclintock/momentuHMM")

To install the latest (unstable) version of the package from Github: Travis-CI Build Status

library(devtools)
install_github("bmcclintock/momentuHMM", ref="develop")

References

McClintock, B.T., Michelot, T. (2018) momentuHMM: R package for generalized hidden Markov models of animal movement. Methods in Ecology and Evolution, 9(6), 1518-1530.

McClintock, B.T., King R., Thomas L., Matthiopoulos J., McConnell B.J., Morales J.M. (2012) A general discrete-time modeling framework for animal movement using multistate random walks. Ecological Monographs, 82(3), 335-349.

McClintock, B.T. (2017) Incorporating telemetry error into hidden Markov models of animal movement using multiple imputation. Journal of Agricultural, Biological, and Environmental Statistics, 22(3), 249-269.