Last updated on 2023-09-23 00:53:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 6.1.9 | 13.44 | 159.79 | 173.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 6.1.9 | 9.22 | 121.01 | 130.23 | OK | |
| r-devel-linux-x86_64-fedora-clang | 6.1.9 | 212.06 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 6.1.9 | 241.66 | OK | |||
| r-devel-windows-x86_64 | 6.1.9 | 12.00 | 238.00 | 250.00 | OK | |
| r-patched-linux-x86_64 | 6.1.9 | 17.01 | 151.74 | 168.75 | OK | |
| r-release-linux-x86_64 | 6.1.9 | 7.95 | 151.96 | 159.91 | OK | |
| r-release-macos-arm64 | 6.1.9 | 61.00 | ERROR | |||
| r-release-macos-x86_64 | 6.1.9 | 116.00 | NOTE | |||
| r-release-windows-x86_64 | 6.1.9 | 15.00 | 166.00 | 181.00 | OK | |
| r-oldrel-macos-arm64 | 6.1.9 | 66.00 | OK | |||
| r-oldrel-macos-x86_64 | 6.1.9 | 79.00 | OK | |||
| r-oldrel-windows-x86_64 | 6.1.9 | 16.00 | 159.00 | 175.00 | OK |
Version: 6.1.9
Check: examples
Result: ERROR
Running examples in ‘ChemoSpec-Ex.R’ failed
The error most likely occurred in:
> ### Name: clupaSpectra
> ### Title: Hierarchical Cluster-Based Peak Alignment on a Spectra Object
> ### Aliases: clupaSpectra
> ### Keywords: utilities
>
> ### ** Examples
>
> # You need to install package speaq for this example
> # This example assumes the graphics output is set to ggplot2 (see ?GraphicsOptions).
> if (requireNamespace("speaq", quietly = TRUE)) {
+ library("ggplot2")
+ data(alignMUD)
+
+ p1 <- plotSpectra(alignMUD, which = 1:20, lab.pos = 4.5, offset = 0.1,
+ yrange = c(0, 5000), amp = 500)
+ p1 <- p1 + ggtitle("Misaligned NMR Spectra") +
+ coord_cartesian(xlim = c(1.5, 1.8), ylim = c(0, 1900))
+ p1
+
+ aMUD <- clupaSpectra(alignMUD)
+
+ p2 <- plotSpectra(aMUD, which = 1:20, lab.pos = 4.5, offset = 0.1,
+ yrange = c(0, 5000), amp = 500)
+ p2 <- p2 + ggtitle("Aligned NMR Spectra") +
+ coord_cartesian(xlim = c(1.5, 1.8), ylim = c(0, 1900))
+ p2
+ }
Coordinate system already present. Adding new coordinate system, which will
replace the existing one.
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 1 has 0 peaks
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 2 has 0 peaks
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 3 has 0 peaks
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 4 has 0 peaks
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 5 has 0 peaks
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 6 has 0 peaks
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 7 has 0 peaks
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 8 has 0 peaks
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 9 has 0 peaks
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 10 has 0 peaks
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 11 has 0 peaks
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 12 has 0 peaks
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 13 has 0 peaks
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 14 has 0 peaks
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 15 has 0 peaks
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 16 has 0 peaks
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 17 has 0 peaks
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 18 has 0 peaks
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 19 has 0 peaks
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 20 has 0 peaks
--------------------------------
CluPA will run with maxShift= 100
If you want CluPA automatically detect the optimal maxShift,
let try with dohCluster(...,maxShift=NULL,..)
--------------------------------
aligning spectrum 2Warning in min(peakList) :
no non-missing arguments to min; returning Inf
Warning in max(peakList) :
no non-missing arguments to max; returning -Inf
Error in startP:(minpeakList - 1) : result would be too long a vector
Calls: clupaSpectra -> <Anonymous> -> .withMaxShift -> hClustAlign
Execution halted
Flavor: r-release-macos-arm64
Version: 6.1.9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘speaq’
Flavor: r-release-macos-x86_64