CRAN Package Check Results for Package SoilR

Last updated on 2021-10-16 00:49:31 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-23 9.44 222.16 231.60 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-23 9.13 151.68 160.81 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-23 269.36 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-23 263.93 NOTE
r-devel-windows-x86_64 1.1-23 14.00 188.00 202.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.1-23 NOTE
r-patched-linux-x86_64 1.1-23 16.57 223.69 240.26 NOTE
r-patched-solaris-x86 1.1-23 311.30 NOTE
r-release-linux-x86_64 1.1-23 10.02 210.85 220.87 NOTE
r-release-macos-arm64 1.1-23 ERROR
r-release-macos-x86_64 1.1-23 NOTE
r-release-windows-ix86+x86_64 1.1-23 20.00 267.00 287.00 NOTE
r-oldrel-macos-x86_64 1.1-23 NOTE
r-oldrel-windows-ix86+x86_64 1.1-23 21.00 288.00 309.00 NOTE

Additional issues

M1mac

Check Details

Version: 1.1-23
Check: R code for possible problems
Result: NOTE
    FcAtm.from.Dataframe: no visible binding for global variable
     'splinefun'
    GaudinskiModel14 : LitterFlux: no visible global function definition
     for 'spline'
    GaudinskiModel14 : RootFlux: no visible global function definition for
     'spline'
    GaudinskiModel14 : fX: no visible global function definition for
     'spline'
    MeanAge2: no visible global function definition for 'splinefun'
    MeanAge3: no visible global function definition for 'pdf'
    MeanAge3: no visible global function definition for 'splinefun'
    MeanAge3 : E: no visible global function definition for 'splinefun'
    MeanAge3 : E: no visible global function definition for 'integrate'
    MeanAge3: no visible global function definition for 'dev.off'
    MeanTT: no visible global function definition for 'splinefun'
    MeanTT : p: no visible global function definition for 'integrate'
    MeanTT: no visible global function definition for 'lines'
    MeanTT: no visible global function definition for 'legend'
    OnepModel: no visible global function definition for 'splinefun'
    OnepModel14 : inputFlux: no visible global function definition for
     'spline'
    OnepModel14 : fX: no visible global function definition for 'spline'
    RothCModel: no visible global function definition for 'splinefun'
    ThreepFeedbackModel: no visible global function definition for
     'splinefun'
    ThreepFeedbackModel14 : inputFlux: no visible global function
     definition for 'spline'
    ThreepFeedbackModel14 : fX: no visible global function definition for
     'spline'
    ThreepParallelModel : inputrate: no visible global function definition
     for 'spline'
    ThreepParallelModel : fX: no visible global function definition for
     'spline'
    ThreepParallelModel14 : inputrate: no visible global function
     definition for 'spline'
    ThreepParallelModel14 : fX: no visible global function definition for
     'spline'
    ThreepSeriesModel: no visible global function definition for
     'splinefun'
    ThreepSeriesModel14 : inputFlux: no visible global function definition
     for 'spline'
    ThreepSeriesModel14 : fX: no visible global function definition for
     'spline'
    TimeMap.from.Dataframe: no visible binding for global variable
     'splinefun'
    TwopFeedbackModel: no visible global function definition for
     'splinefun'
    TwopFeedbackModel : fX: no visible global function definition for
     'spline'
    TwopFeedbackModel14 : inputFlux: no visible global function definition
     for 'spline'
    TwopFeedbackModel14 : fX: no visible global function definition for
     'spline'
    TwopParallelModel : inputrate: no visible global function definition
     for 'spline'
    TwopParallelModel : fX: no visible global function definition for
     'spline'
    TwopParallelModel14 : inputrate: no visible global function definition
     for 'spline'
    TwopParallelModel14 : fX: no visible global function definition for
     'spline'
    TwopSeriesModel: no visible global function definition for 'splinefun'
    TwopSeriesModel14 : inputFlux: no visible global function definition
     for 'spline'
    TwopSeriesModel14 : fX: no visible global function definition for
     'spline'
    Yasso07Model: no visible global function definition for 'splinefun'
    YassoModel: no visible global function definition for 'splinefun'
    linesCPool: no visible global function definition for 'lines'
    plotAndCheck: no visible global function definition for 'pdf'
    plotAndCheck: no visible global function definition for 'dev.off'
    plotC14Pool: no visible global function definition for 'lines'
    plotCPool: no visible global function definition for 'lines'
    res2fun: no visible global function definition for 'splinefun'
    turnoverFit: no visible binding for global variable 'IntCal13'
    turnoverFit: no visible binding for global variable 'Hua2013'
    turnoverFit: no visible global function definition for 'tail'
    turnoverFit: no visible global function definition for 'optimize'
    turnoverFit: no visible global function definition for 'par'
    turnoverFit: no visible global function definition for 'points'
    turnoverFit: no visible global function definition for 'lines'
    turnoverFit: no visible global function definition for 'legend'
    turnoverFit: no visible global function definition for 'curve'
    turnoverFit: no visible global function definition for 'abline'
    BoundFc,data.frame-missing-missing-missing-character-missing: no
     visible binding for global variable 'splinefun'
    BoundFc,data.frame-missing-missing-numeric-character-missing: no
     visible binding for global variable 'splinefun'
    BoundInFlux,data.frame-missing-missing-missing-missing: no visible
     binding for global variable 'splinefun'
    computeResults,MCSim : singleThreadParticleSimulator: no visible global
     function definition for 'integrate'
    computeResults,MCSim : singleThreadParticleSimulator: no visible global
     function definition for 'runif'
    getAccumulatedRelease,Model: no visible global function definition for
     'splinefun'
    getMeanTransitTime,ConstLinDecompOp: no visible global function
     definition for 'splinefun'
    getMeanTransitTime,ConstLinDecompOp: no visible global function
     definition for 'integrate'
    initialize,BoundFc: no visible binding for global variable 'splinefun'
    initialize,NlModel: no visible global function definition for
     'TransportDecompositionOperator.new'
    Undefined global functions or variables:
     Hua2013 IntCal13 TransportDecompositionOperator.new abline curve
     dev.off integrate legend lines optimize par pdf points runif spline
     splinefun tail
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "curve", "legend", "lines", "par",
     "points")
     importFrom("stats", "integrate", "optimize", "runif", "spline",
     "splinefun")
     importFrom("utils", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-23
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘ParameterEstimation.Rnw’
     ...
    
    > cov0 <- summary(Fit)$cov.scaled
    
    > MCMC <- modMCMC(f = R14tCost, p = Fit$par, niter = 1000,
    + jump = NULL, var0 = var0, wvar0 = 0, lower = c(-3, -3, -1,
    + 0, 0), upper = .... [TRUNCATED]
    
     When sourcing ‘ParameterEstimation.R’:
    Error: values of 'p' should be inbetween 'lower' and 'upper'
    Execution halted
    
     ‘GeneralModel.Rnw’... [1s/1s] OK
     ‘ParameterEstimation.Rnw’... failed
Flavor: r-release-macos-arm64

Version: 1.1-23
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘GeneralModel.Rnw’ using Sweave
    Loading required package: deSolve
    Loading required package: parallel
    Loading required package: RUnit
    --- finished re-building ‘GeneralModel.Rnw’
    
    --- re-building ‘ParameterEstimation.Rnw’ using Sweave
    Loading required package: deSolve
    Loading required package: parallel
    Loading required package: RUnit
    Loading required package: rootSolve
    Loading required package: coda
    Warning in title(...) :
     font metrics unknown for Unicode character U+2030
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
    Warning in title(...) :
     font metrics unknown for Unicode character U+2030
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
    Warning in title(...) :
     conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
     The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
     Please change your code to use the new keyword argument inputFc.
    
    Error: processing vignette 'ParameterEstimation.Rnw' failed with diagnostics:
     chunk 19
    Error in modMCMC(f = R14tCost, p = Fit$par, niter = 1000, jump = NULL, :
     values of 'p' should be inbetween 'lower' and 'upper'
    
    --- failed re-building ‘ParameterEstimation.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘ParameterEstimation.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64