CRAN Package Check Results for Package admiralonco

Last updated on 2024-07-17 00:48:12 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 9.07 270.59 279.66 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 7.03 193.67 200.70 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 351.15 OK
r-devel-linux-x86_64-fedora-gcc 1.1.0 336.56 OK
r-devel-windows-x86_64 1.1.0 8.00 194.00 202.00 OK
r-patched-linux-x86_64 1.1.0 8.20 254.21 262.41 OK
r-release-linux-x86_64 1.1.0 5.30 249.87 255.17 OK
r-release-macos-arm64 1.1.0 110.00 OK
r-release-macos-x86_64 1.1.0 235.00 OK
r-release-windows-x86_64 1.1.0 8.00 193.00 201.00 OK
r-oldrel-macos-arm64 1.1.0 109.00 ERROR
r-oldrel-macos-x86_64 1.1.0 194.00 ERROR
r-oldrel-windows-x86_64 1.1.0 11.00 253.00 264.00 OK

Check Details

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘admiralonco-Ex.R’ failed The error most likely occurred in: > ### Name: rsp_y > ### Title: Pre-Defined Response Event Objects > ### Aliases: rsp_y no_data_n cb_y bor_cr bor_pr bor_sd bor_non_crpd bor_pd > ### bor_ne no_data_missing crsp_y_cr crsp_y_pr cbor_cr cbor_pr > ### Keywords: source_specifications > > ### ** Examples > > # This shows the definition of all pre-defined `event` objects that ship > # with {admiralonco} > exports <- sort(getNamespaceExports("admiralonco")) > for (obj_name in exports) { + obj <- getExportedValue("admiralonco", obj_name) + if (inherits(obj, "event_def")) { + cat("\n", obj_name, ":\n", sep = "") + print(obj, indent = 2) + } + } bor_cr: <event> object description: "Define complete response (CR) for best overall response (BOR)" dataset_name: "ovr" condition: AVALC == "CR" mode: NULL order: NULL set_values_to: Error in is_named(list[[name]]) : could not find function "is_named" Calls: print -> print.source -> print_named_list Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘adrs.Rmd’ ... + case_when(arg == "NE" ~ 1, arg == "CR" ~ 2, arg == "PR" ~ + 3, arg == "SD" ~ 4, arg == "NON-CR/NON-PD" .... [TRUNCATED] > adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = c(get_admiral_option("subject_keys"), + .... [TRUNCATED] When sourcing ‘adrs.R’: Error: could not find function "is_named" Execution halted when running code in ‘adrs_basic.Rmd’ ... + case_when(arg == "NE" ~ 1, arg == "CR" ~ 2, arg == "PR" ~ + 3, arg == "SD" ~ 4, arg == "NON-CR/NON-PD" .... [TRUNCATED] > adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = c(get_admiral_option("subject_keys"), + .... [TRUNCATED] When sourcing ‘adrs_basic.R’: Error: could not find function "is_named" Execution halted when running code in ‘adrs_imwg.Rmd’ ... > if (nrow(many_nes) > 0) { + cli_warn("There are subjects with more than three NEs in a row.") + } > adrs_imwg <- adrs_imwg %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = exprs(!!!get_admiral_option("sub ..." ... [TRUNCATED] When sourcing ‘adrs_imwg.R’: Error: could not find function "is_named" Execution halted when running code in ‘adtr.Rmd’ ... > adtr_sum <- adtr_sum %>% derive_var_merged_summary(dataset_add = adtr, + by_vars = get_admiral_option("subject_keys"), filter_add = AVISIT == .... [TRUNCATED] > adtr_sum <- adtr_sum %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = get_admiral_option("subject_keys") .... [TRUNCATED] When sourcing ‘adtr.R’: Error: could not find function "is_named" Execution halted when running code in ‘irecist.Rmd’ ... |01-701-1115 |WEEK 6 |OVR |Overall Response by Investigator |iUPD |iUPD | 2| |01-701-1118 |WEEK 6 |OVR |Overall Response by Investigator |iUPD |iUPD | 2| > adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = c(get_admiral_option("subject_keys"), + .... [TRUNCATED] When sourcing ‘irecist.R’: Error: could not find function "is_named" Execution halted ‘admiralonco.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘adrs.Rmd’ using ‘UTF-8’... failed ‘adrs_basic.Rmd’ using ‘UTF-8’... failed ‘adrs_imwg.Rmd’ using ‘UTF-8’... failed ‘adtr.Rmd’ using ‘UTF-8’... failed ‘adtte.Rmd’ using ‘UTF-8’... [2s/2s] OK ‘irecist.Rmd’ using ‘UTF-8’... failed ‘nactdt.Rmd’ using ‘UTF-8’... [1s/2s] OK Flavor: r-oldrel-macos-arm64

Version: 1.1.0
Check: re-building of vignette outputs
Result: NOTE Error(s) in re-building vignettes: --- re-building ‘admiralonco.Rmd’ using rmarkdown --- finished re-building ‘admiralonco.Rmd’ --- re-building ‘adrs.Rmd’ using rmarkdown Quitting from lines 233-256 [unnamed-chunk-11] (adrs.Rmd) Error: processing vignette 'adrs.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘adrs.Rmd’ --- re-building ‘adrs_basic.Rmd’ using rmarkdown Quitting from lines 232-255 [unnamed-chunk-11] (adrs_basic.Rmd) Error: processing vignette 'adrs_basic.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘adrs_basic.Rmd’ --- re-building ‘adrs_imwg.Rmd’ using rmarkdown Quitting from lines 558-569 [unnamed-chunk-17] (adrs_imwg.Rmd) Error: processing vignette 'adrs_imwg.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘adrs_imwg.Rmd’ --- re-building ‘adtr.Rmd’ using rmarkdown Quitting from lines 355-369 [unnamed-chunk-16] (adtr.Rmd) Error: processing vignette 'adtr.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘adtr.Rmd’ --- re-building ‘adtte.Rmd’ using rmarkdown --- finished re-building ‘adtte.Rmd’ --- re-building ‘irecist.Rmd’ using rmarkdown Quitting from lines 243-254 [unnamed-chunk-11] (irecist.Rmd) Error: processing vignette 'irecist.Rmd' failed with diagnostics: could not find function "is_named" --- failed re-building ‘irecist.Rmd’ --- re-building ‘nactdt.Rmd’ using rmarkdown --- finished re-building ‘nactdt.Rmd’ SUMMARY: processing the following files failed: ‘adrs.Rmd’ ‘adrs_basic.Rmd’ ‘adrs_imwg.Rmd’ ‘adtr.Rmd’ ‘irecist.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘adrs.Rmd’ ... + case_when(arg == "NE" ~ 1, arg == "CR" ~ 2, arg == "PR" ~ + 3, arg == "SD" ~ 4, arg == "NON-CR/NON-PD" .... [TRUNCATED] > adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = c(get_admiral_option("subject_keys"), + .... [TRUNCATED] When sourcing ‘adrs.R’: Error: could not find function "is_named" Execution halted when running code in ‘adrs_basic.Rmd’ ... + case_when(arg == "NE" ~ 1, arg == "CR" ~ 2, arg == "PR" ~ + 3, arg == "SD" ~ 4, arg == "NON-CR/NON-PD" .... [TRUNCATED] > adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = c(get_admiral_option("subject_keys"), + .... [TRUNCATED] When sourcing ‘adrs_basic.R’: Error: could not find function "is_named" Execution halted when running code in ‘adrs_imwg.Rmd’ ... > if (nrow(many_nes) > 0) { + cli_warn("There are subjects with more than three NEs in a row.") + } > adrs_imwg <- adrs_imwg %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = exprs(!!!get_admiral_option("sub ..." ... [TRUNCATED] When sourcing ‘adrs_imwg.R’: Error: could not find function "is_named" Execution halted when running code in ‘adtr.Rmd’ ... > adtr_sum <- adtr_sum %>% derive_var_merged_summary(dataset_add = adtr, + by_vars = get_admiral_option("subject_keys"), filter_add = AVISIT == .... [TRUNCATED] > adtr_sum <- adtr_sum %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = get_admiral_option("subject_keys") .... [TRUNCATED] When sourcing ‘adtr.R’: Error: could not find function "is_named" Execution halted when running code in ‘irecist.Rmd’ ... |01-701-1115 |WEEK 6 |OVR |Overall Response by Investigator |iUPD |iUPD | 2| |01-701-1118 |WEEK 6 |OVR |Overall Response by Investigator |iUPD |iUPD | 2| > adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag, + args = params(by_vars = c(get_admiral_option("subject_keys"), + .... [TRUNCATED] When sourcing ‘irecist.R’: Error: could not find function "is_named" Execution halted ‘admiralonco.Rmd’ using ‘UTF-8’... [1s/2s] OK ‘adrs.Rmd’ using ‘UTF-8’... failed ‘adrs_basic.Rmd’ using ‘UTF-8’... failed ‘adrs_imwg.Rmd’ using ‘UTF-8’... failed ‘adtr.Rmd’ using ‘UTF-8’... failed ‘adtte.Rmd’ using ‘UTF-8’... [4s/6s] OK ‘irecist.Rmd’ using ‘UTF-8’... failed ‘nactdt.Rmd’ using ‘UTF-8’... [2s/3s] OK Flavor: r-oldrel-macos-x86_64