CRAN Package Check Results for Package hydroPSO

Last updated on 2018-04-19 00:46:41 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3-4 10.52 79.81 90.33 ERROR
r-devel-linux-x86_64-debian-gcc 0.3-4 9.26 70.67 79.93 ERROR
r-devel-linux-x86_64-fedora-clang 0.3-4 125.16 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3-4 126.88 NOTE
r-devel-windows-ix86+x86_64 0.3-4 28.00 139.00 167.00 NOTE
r-devel-osx-x86_64 0.3-4 NOTE
r-patched-linux-x86_64 0.3-4 11.51 89.06 100.57 ERROR
r-patched-solaris-x86 0.3-4 176.00 NOTE
r-release-linux-x86_64 0.3-4 10.31 91.31 101.62 NOTE
r-release-windows-ix86+x86_64 0.3-4 15.00 131.00 146.00 NOTE
r-release-osx-x86_64 0.3-4 NOTE
r-oldrel-windows-ix86+x86_64 0.3-4 24.00 136.00 160.00 NOTE

Check Details

Version: 0.3-4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘SWAT2R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-osx-x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64

Version: 0.3-4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘hydroGOF’ ‘hydroTSM’ ‘parallel’ ‘vioplot’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-osx-x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3-4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     params2ecdf.default plot_ParamsPerIter.data.frame
     plot_ParamsPerIter.matrix plot_params.default quant2ecdf.data.frame
     quant2ecdf.default quant2ecdf.matrix read_params.default
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3-4
Check: R code for possible problems
Result: NOTE
    .pst2paramfiles: no visible global function definition for
     ‘write.table’
    .pst2paramranges: no visible global function definition for
     ‘write.table’
    .read_observations: no visible global function definition for
     ‘read.table’
    .read_paramfiles: no visible global function definition for
     ‘read.table’
    .read_paramranges: no visible global function definition for
     ‘read.table’
    ComputeSwarmRadiusAndDiameter: no visible global function definition
     for ‘median’
    InitializateV: no visible global function definition for ‘runif’
    Random.Bounded.Matrix: no visible global function definition for
     ‘runif’
    Random.Topology.Generation: no visible global function definition for
     ‘runif’
    RegroupingSwarm: no visible global function definition for ‘runif’
    alea.normal: no visible global function definition for ‘runif’
    alea.sphere: no visible global function definition for ‘rnorm’
    alea.sphere: no visible global function definition for ‘runif’
    compute.veloc: no visible global function definition for ‘runif’
    hydroPSO: no visible global function definition for ‘modifyList’
    hydroPSO: no visible global function definition for
     ‘installed.packages’
    hydroPSO: no visible global function definition for ‘ls.str’
    hydroPSO: no visible global function definition for ‘sessionInfo’
    hydroPSO: no visible global function definition for ‘runif’
    hydroPSO: no visible global function definition for ‘colorRampPalette’
    hydroPSO: no visible global function definition for ‘write.table’
    hydroPSO: no visible global function definition for ‘window’
    hydromod: no visible global function definition for ‘sessionInfo’
    hydromod: no visible global function definition for ‘modifyList’
    hydromod: no visible global function definition for ‘window’
    hydromod: no visible global function definition for ‘png’
    hydromod: no visible global function definition for
     ‘installed.packages’
    hydromod: no visible global function definition for ‘ggof’
    hydromod: no visible global function definition for ‘dev.off’
    hydromod.eval: no visible global function definition for ‘modifyList’
    hydromod.eval.SA: no visible global function definition for
     ‘modifyList’
    lhoat: no visible global function definition for ‘modifyList’
    lhoat: no visible global function definition for ‘ls.str’
    lhoat: no visible global function definition for ‘sessionInfo’
    lhoat: no visible global function definition for ‘rnorm’
    lhoat: no visible global function definition for ‘write.table’
    params2ecdf.default: no visible global function definition for ‘png’
    params2ecdf.default: no visible global function definition for
     ‘dev.new’
    params2ecdf.default: no visible global function definition for ‘par’
    params2ecdf.default: no visible global function definition for ‘Axis’
    params2ecdf.default: no visible global function definition for ‘abline’
    params2ecdf.default: no visible global function definition for
     ‘approxfun’
    params2ecdf.default: no visible global function definition for ‘legend’
    params2ecdf.default: no visible global function definition for ‘mtext’
    params2ecdf.default: no visible global function definition for
     ‘dev.off’
    pest2hydroPSO: no visible global function definition for ‘read.table’
    pest2hydroPSO: no visible global function definition for ‘write.table’
    plot_2parOF: no visible global function definition for
     ‘colorRampPalette’
    plot_2parOF: no visible global function definition for
     ‘installed.packages’
    plot_2parOF: no visible global function definition for ‘fivenum’
    plot_GofPerParticle: no visible global function definition for
     ‘rainbow’
    plot_GofPerParticle: no visible global function definition for ‘png’
    plot_GofPerParticle: no visible global function definition for ‘par’
    plot_GofPerParticle: no visible global function definition for ‘plot’
    plot_GofPerParticle: no visible global function definition for ‘mtext’
    plot_GofPerParticle: no visible global function definition for ‘lines’
    plot_GofPerParticle: no visible global function definition for
     ‘dev.off’
    plot_NparOF: no visible global function definition for
     ‘colorRampPalette’
    plot_NparOF: no visible global function definition for ‘quantile’
    plot_ParamsPerIter.data.frame: no visible global function definition
     for ‘rainbow’
    plot_ParamsPerIter.default: no visible global function definition for
     ‘rainbow’
    plot_ParamsPerIter.default: no visible global function definition for
     ‘png’
    plot_ParamsPerIter.default: no visible global function definition for
     ‘par’
    plot_ParamsPerIter.default: no visible global function definition for
     ‘plot’
    plot_ParamsPerIter.default: no visible global function definition for
     ‘mtext’
    plot_ParamsPerIter.default: no visible global function definition for
     ‘dev.off’
    plot_ParamsPerIter.matrix: no visible global function definition for
     ‘rainbow’
    plot_convergence: no visible global function definition for ‘png’
    plot_convergence: no visible global function definition for ‘par’
    plot_convergence: no visible global function definition for ‘plot’
    plot_convergence: no visible global function definition for ‘grid’
    plot_convergence: no visible global function definition for ‘axis’
    plot_convergence: no visible global function definition for ‘mtext’
    plot_convergence: no visible global function definition for ‘legend’
    plot_convergence: no visible global function definition for ‘dev.off’
    plot_out: no visible global function definition for
     ‘installed.packages’
    plot_out: no visible global function definition for ‘png’
    plot_out: no visible global function definition for ‘lm’
    plot_out: no visible global function definition for ‘plot’
    plot_out: no visible global function definition for ‘grid’
    plot_out: no visible global function definition for ‘abline’
    plot_out: no visible global function definition for ‘cor’
    plot_out: no visible global function definition for ‘legend’
    plot_out: no visible global function definition for ‘zoo’
    plot_out: no visible global function definition for ‘ggof’
    plot_out: no visible global function definition for ‘dev.off’
    plot_params.default: no visible global function definition for ‘png’
    plot_params.default: no visible global function definition for ‘par’
    plot_params.default: no visible global function definition for ‘plot’
    plot_params.default: no visible global function definition for ‘abline’
    plot_params.default: no visible global function definition for ‘axis’
    plot_params.default: no visible global function definition for ‘lines’
    plot_params.default: no visible global function definition for ‘hist’
    plot_params.default: no visible global function definition for
     ‘boxplot’
    plot_params.default: no visible global function definition for
     ‘vioplot’
    plot_params.default: no visible global function definition for
     ‘hydropairs’
    plot_params.default: no visible global function definition for ‘mtext’
    plot_params.default: no visible global function definition for
     ‘dev.off’
    plot_particles: no visible global function definition for
     ‘colorRampPalette’
    plot_particles: no visible global function definition for ‘dev.new’
    plot_particles: no visible global function definition for ‘rainbow’
    plot_particles: no visible global function definition for ‘png’
    plot_particles: no visible global function definition for ‘dev.off’
    plot_results: no visible global function definition for
     ‘colorRampPalette’
    plot_results: no visible global function definition for ‘dev.new’
    plot_results: no visible global function definition for ‘rainbow’
    plot_results: no visible global function definition for ‘time’
    position.update.and.boundary.treatment: no visible global function
     definition for ‘runif’
    quant2ecdf.default: no visible global function definition for ‘par’
    quant2ecdf.default: no visible global function definition for
     ‘quantile’
    quant2ecdf.default: no visible global function definition for ‘Axis’
    quant2ecdf.default: no visible global function definition for ‘abline’
    quant2ecdf.default: no visible global function definition for
     ‘approxfun’
    quant2ecdf.default: no visible global function definition for ‘legend’
    quant2ecdf.default: no visible global function definition for ‘mtext’
    read.paramfile: no visible global function definition for ‘read.table’
    read_GofPerParticle: no visible global function definition for
     ‘read.table’
    read_GofPerParticle: no visible global function definition for
     ‘rainbow’
    read_best: no visible global function definition for ‘read.table’
    read_convergence: no visible global function definition for
     ‘read.table’
    read_out: no visible global function definition for ‘read.table’
    read_out: no visible global function definition for
     ‘installed.packages’
    read_out: no visible global function definition for ‘time’
    read_params.default: no visible global function definition for
     ‘read.table’
    read_particles: no visible global function definition for
     ‘colorRampPalette’
    read_particles: no visible global function definition for ‘read.table’
    sackley: no visible global function definition for ‘runif’
    sgriewank: no visible global function definition for ‘runif’
    srastrigin: no visible global function definition for ‘runif’
    srosenbrock: no visible global function definition for ‘runif’
    sschwefel1_2: no visible global function definition for ‘runif’
    ssphere: no visible global function definition for ‘runif’
    verification: no visible global function definition for ‘modifyList’
    verification: no visible global function definition for ‘sessionInfo’
    wquantile: no visible global function definition for ‘txtProgressBar’
    wquantile : <anonymous>: no visible global function definition for
     ‘setTxtProgressBar’
    Undefined global functions or variables:
     Axis abline approxfun axis boxplot colorRampPalette cor dev.new
     dev.off fivenum ggof grid hist hydropairs installed.packages legend
     lines lm ls.str median modifyList mtext par plot png quantile rainbow
     read.table rnorm runif sessionInfo setTxtProgressBar time
     txtProgressBar vioplot window write.table zoo
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.new", "dev.off",
     "png", "rainbow")
     importFrom("graphics", "Axis", "abline", "axis", "boxplot", "grid",
     "hist", "legend", "lines", "mtext", "par", "plot")
     importFrom("stats", "approxfun", "cor", "fivenum", "lm", "median",
     "quantile", "rnorm", "runif", "time", "window")
     importFrom("utils", "installed.packages", "ls.str", "modifyList",
     "read.table", "sessionInfo", "setTxtProgressBar",
     "txtProgressBar", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-osx-x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3-4
Check: examples
Result: ERROR
    Running examples in ‘hydroPSO-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: quant2ecdf
    > ### Title: Simulated Values -> Empirical CDFs
    > ### Aliases: quant2ecdf quant2ecdf.default quant2ecdf.matrix
    > ### quant2ecdf.data.frame
    > ### Keywords: math manip graph
    >
    > ### ** Examples
    >
    > # random matrix with 100 simulated values (in columns) corresponding to 10
    > # different behavioural parameter sets
    > x <- matrix(rnorm(1000), ncol=10, nrow=100)
    >
    > # empirical CDFs for the quantiles 0.05, 0.5 and 0.95, with equal weight for
    > # each parameter set
    > quant2ecdf(sim=x, weights=1:10, byrow=FALSE)
    Error in UseMethod("quant2ecdf") :
     no applicable method for 'quant2ecdf' applied to an object of class "c('matrix', 'double', 'numeric')"
    Calls: quant2ecdf
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64