Last updated on 2023-03-21 00:50:28 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 0.9.1 | 4.22 | 48.26 | 52.48 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1 | 317.36 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.1 | 321.91 | NOTE | |||
| r-patched-linux-x86_64 | 0.9.1 | 5.11 | 255.49 | 260.60 | OK | |
| r-release-linux-x86_64 | 0.9.1 | 4.47 | 259.18 | 263.65 | OK | |
| r-release-macos-arm64 | 0.9.1 | 60.00 | NOTE | |||
| r-release-macos-x86_64 | 0.9.1 | 108.00 | NOTE | |||
| r-release-windows-x86_64 | 0.9.1 | 29.00 | 298.00 | 327.00 | FAIL | |
| r-oldrel-macos-arm64 | 0.9.1 | 82.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.9.1 | 110.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.9.1 | 11.00 | 315.00 | 326.00 | OK |
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in ‘partR2-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mergeR2
> ### Title: Merge partR2 objects to combine R2s for main effects and
> ### interactions
> ### Aliases: mergeR2
>
> ### ** Examples
>
>
> data(biomass)
> library(lme4)
Loading required package: Matrix
>
> # scale data
> biomass[] <- lapply(biomass, function(x) if (is.double(x)) scale(x) else x)
>
> # Full model
> mod_full <- lmer(Biomass ~ Year + Temperature * Precipitation + SpeciesDiversity + (1|Population),
+ data = biomass)
> # Semi-partial R2 for interaction and all other predictors of interest
> (R2_full <- partR2(mod_full, partvars = c("Temperature:Precipitation", "SpeciesDiversity", "Year"),
+ data = biomass))
Error in vectbl_assign(x[[j]], i, recycled_value[[j]]) :
DLL requires the use of native symbols
Calls: partR2 ... tbl_subassign_row -> withCallingHandlers -> vectbl_assign
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(partR2)
> test_check("partR2")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 65 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_bootstrap.R:22:1'): (code run outside of `test_that()`) ────────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─partR2:::bootstrap_all(...) at test_bootstrap.R:22:0
2. └─pbapply::pblapply(...)
3. └─base::lapply(X, FUN, ...)
4. └─purrr (local) FUN(X[[i]], ...)
5. ├─purrr:::capture_output(.f(...))
6. │ └─base::withCallingHandlers(code, warning = wHandler, message = mHandler)
7. └─partR2 (local) .f(...)
8. └─partR2:::get_bw(mod_iter)
9. ├─base::`[<-`(`*tmp*`, ests$term %in% names(sds), "estimate", value = `<dbl>`)
10. └─tibble:::`[<-.tbl_df`(...)
11. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
12. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
13. ├─base::withCallingHandlers(...)
14. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
── Error ('test_combinations.R:49:1'): (code run outside of `test_that()`) ─────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─partR2::partR2(...) at test_combinations.R:49:0
2. └─partR2:::get_bw(mod)
3. ├─base::`[<-`(`*tmp*`, ests$term %in% names(sds), "estimate", value = `<dbl>`)
4. └─tibble:::`[<-.tbl_df`(...)
5. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
6. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
7. ├─base::withCallingHandlers(...)
8. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
── Error ('test_merging.R:18:1'): (code run outside of `test_that()`) ──────────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─partR2::partR2(...) at test_merging.R:18:0
2. └─partR2:::get_bw(mod)
3. ├─base::`[<-`(`*tmp*`, ests$term %in% names(sds), "estimate", value = `<dbl>`)
4. └─tibble:::`[<-.tbl_df`(...)
5. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
6. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
7. ├─base::withCallingHandlers(...)
8. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
── Error ('test_methods.R:11:1'): (code run outside of `test_that()`) ──────────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─partR2::partR2(mod, data = biomass, R2_type = "marginal", CI = 0.95) at test_methods.R:11:0
2. └─partR2:::get_bw(mod)
3. ├─base::`[<-`(`*tmp*`, ests$term %in% names(sds), "estimate", value = `<dbl>`)
4. └─tibble:::`[<-.tbl_df`(...)
5. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
6. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
7. ├─base::withCallingHandlers(...)
8. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
── Error ('test_partR2.R:17:3'): partR2 works for some special cases ───────────
Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
Backtrace:
▆
1. └─partR2::partR2(...) at test_partR2.R:17:2
2. └─partR2:::get_bw(mod)
3. ├─base::`[<-`(`*tmp*`, ests$term %in% names(sds), "estimate", value = `<dbl>`)
4. └─tibble:::`[<-.tbl_df`(...)
5. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
6. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg, call)
7. ├─base::withCallingHandlers(...)
8. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 65 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Using_partR2.Rmd’ using rmarkdown
Quitting from lines 76-78 (Using_partR2.Rmd)
Error: processing vignette ‘Using_partR2.Rmd’ failed with diagnostics:
DLL requires the use of native symbols
--- failed re-building ‘Using_partR2.Rmd’
SUMMARY: processing the following file failed:
‘Using_partR2.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.9.1
Check: re-building of vignette outputs
Result: FAIL
Flavor: r-release-windows-x86_64