Last updated on 2023-09-29 00:57:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.99.13 | 9.95 | 160.22 | 170.17 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.99.13 | 7.70 | 120.89 | 128.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.99.13 | 202.21 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.99.13 | 215.96 | NOTE | |||
| r-devel-windows-x86_64 | 0.99.13 | 11.00 | 163.00 | 174.00 | OK | |
| r-patched-linux-x86_64 | 0.99.13 | 6.50 | 152.97 | 159.47 | OK | |
| r-release-linux-x86_64 | 0.99.13 | 6.16 | 151.59 | 157.75 | OK | |
| r-release-macos-arm64 | 0.99.13 | 506.00 | ERROR | |||
| r-release-macos-x86_64 | 0.99.13 | 183.00 | ERROR | |||
| r-release-windows-x86_64 | 0.99.13 | 13.00 | 188.00 | 201.00 | OK | |
| r-oldrel-macos-arm64 | 0.99.13 | 103.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.99.13 | 224.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.99.13 | 14.00 | 190.00 | 204.00 | OK |
Version: 0.99.13
Check: data for non-ASCII characters
Result: NOTE
Note: found 12 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.99.13
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BiocPkgTools', 'biocViews'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 0.99.13
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘BiocPkgTools’, ‘biocViews’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 0.99.13
Check: examples
Result: ERROR
Running examples in ‘rworkflows-Ex.R’ failed
The error most likely occurred in:
> ### Name: fill_description
> ### Title: Fill _DESCRIPTION_
> ### Aliases: fill_description
>
> ### ** Examples
>
> #### Get example DESCRIPTION file ####
> url <- "https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION"
> path <- tempfile(fileext = "DESCRIPTION")
> utils::download.file(url,path)
trying URL 'https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION'
Content type 'text/plain; charset=utf-8' length 707 bytes
==================================================
downloaded 707 bytes
>
> #### Fill out DESCRIPTION file ####
> d <- fill_description(
+ path = path,
+ package = "MyPackageName",
+ title = "This Package Does Awesome Stuff",
+ description = paste(
+ "MyPackageName does several awesome things.",
+ "Describe thing1.",
+ "Describe thing2.",
+ "Describe thing3."
+ ),
+ github_owner = "OwnerName",
+ biocviews = c("Genetics", "SystemsBiology"))
Error in dirname(root) : a character vector argument expected
Calls: fill_description ... renv_path_relative -> startswith -> substring -> dirname
Traceback (most recent calls last):
29: fill_description(path = path, package = "MyPackageName", title = "This Package Does Awesome Stuff",
description = paste("MyPackageName does several awesome things.",
"Describe thing1.", "Describe thing2.", "Describe thing3."),
github_owner = "OwnerName", biocviews = c("Genetics", "SystemsBiology"))
28: infer_deps(which = "Suggests", add_newlines = TRUE)
27: renv::dependencies(path = path, progress = progress, errors = errors,
dev = dev)
26: renv_dependencies_impl(path = path, root = root, quiet = quiet,
progress = progress, errors = errors, dev = dev, ...)
25: renv_dependencies_find(path, root)
24: lapply(path, renv_dependencies_find_impl, root = root, depth = 0)
23: FUN(X[[i]], ...)
22: renv_dependencies_find_dir(path, root, depth)
21: map(children, renv_dependencies_find_impl, root = root, depth = depth)
20: lapply(x, f, ...)
19: FUN(X[[i]], ...)
18: renv_dependencies_find_dir(path, root, depth)
17: map(children, renv_dependencies_find_impl, root = root, depth = depth)
16: lapply(x, f, ...)
15: FUN(X[[i]], ...)
14: renv_dependencies_find_dir(path, root, depth)
13: map(children, renv_dependencies_find_impl, root = root, depth = depth)
12: lapply(x, f, ...)
11: FUN(X[[i]], ...)
10: renv_dependencies_find_dir(path, root, depth)
9: map(children, renv_dependencies_find_impl, root = root, depth = depth)
8: lapply(x, f, ...)
7: FUN(X[[i]], ...)
6: renv_dependencies_find_dir(path, root, depth)
5: renv_dependencies_find_dir_children(path, root, depth)
4: renv_path_relative(path, dirname(root))
3: startswith(path, root)
2: substring(string, 1, nchar(prefix))
1: dirname(root)
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.99.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/86s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
18. └─renv (local) FUN(X[[i]], ...)
19. └─renv:::renv_dependencies_find_dir(path, root, depth)
20. └─renv:::map(...)
21. └─base::lapply(x, f, ...)
22. └─renv (local) FUN(X[[i]], ...)
23. └─renv:::renv_dependencies_find_dir(path, root, depth)
24. └─renv:::renv_dependencies_find_dir_children(path, root, depth)
25. ├─renv:::renv_path_relative(path, dirname(root))
26. │ └─renv:::startswith(path, root)
27. │ └─base::substring(string, 1, nchar(prefix))
28. └─base::dirname(root)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 140 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 0.99.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
18. └─renv (local) FUN(X[[i]], ...)
19. └─renv:::renv_dependencies_find_dir(path, root, depth)
20. └─renv:::map(...)
21. └─base::lapply(x, f, ...)
22. └─renv (local) FUN(X[[i]], ...)
23. └─renv:::renv_dependencies_find_dir(path, root, depth)
24. └─renv:::renv_dependencies_find_dir_children(path, root, depth)
25. ├─renv:::renv_path_relative(path, dirname(root))
26. │ └─renv:::startswith(path, root)
27. │ └─base::substring(string, 1, nchar(prefix))
28. └─base::dirname(root)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 140 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.99.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
18. └─renv (local) FUN(X[[i]], ...)
19. └─renv:::renv_dependencies_find_dir(path, root, depth)
20. └─renv:::map(...)
21. └─base::lapply(x, f, ...)
22. └─renv (local) FUN(X[[i]], ...)
23. └─renv:::renv_dependencies_find_dir(path, root, depth)
24. └─renv:::renv_dependencies_find_dir_children(path, root, depth)
25. ├─renv:::renv_path_relative(path, dirname(root))
26. │ └─renv:::startswith(path, root)
27. │ └─base::substring(string, 1, nchar(prefix))
28. └─base::dirname(root)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 140 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.99.13
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BiocPkgTools’
Flavor: r-oldrel-macos-x86_64
Version: 0.99.13
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘BiocPkgTools’
Flavor: r-oldrel-macos-x86_64
Version: 0.99.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
18. └─renv (local) FUN(X[[i]], ...)
19. └─renv:::renv_dependencies_find_dir(path, root, depth)
20. └─renv:::map(...)
21. └─base::lapply(x, f, ...)
22. └─renv (local) FUN(X[[i]], ...)
23. └─renv:::renv_dependencies_find_dir(path, root, depth)
24. └─renv:::renv_dependencies_find_dir_children(path, root, depth)
25. ├─renv:::renv_path_relative(path, dirname(root))
26. │ └─renv:::startswith(path, root)
27. │ └─base::substring(string, 1, nchar(prefix))
28. └─base::dirname(root)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 140 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64