CRAN Package Check Results for Package tracerer

Last updated on 2024-06-13 00:55:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2.3 17.78 47.59 65.37 NOTE
r-devel-linux-x86_64-debian-gcc 2.2.3 10.73 29.05 39.78 ERROR
r-devel-linux-x86_64-fedora-clang 2.2.3 86.27 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2.3 95.34 NOTE
r-devel-windows-x86_64 2.2.3 14.00 81.00 95.00 NOTE
r-patched-linux-x86_64 2.2.3 15.41 44.21 59.62 NOTE
r-release-linux-x86_64 2.2.3 15.23 44.43 59.66 NOTE
r-release-macos-arm64 2.2.3 32.00 NOTE
r-release-macos-x86_64 2.2.3 57.00 NOTE
r-release-windows-x86_64 2.2.3 14.00 90.00 104.00 NOTE
r-oldrel-macos-arm64 2.2.3 104.00 OK
r-oldrel-macos-x86_64 2.2.3 105.00 OK
r-oldrel-windows-x86_64 2.2.3 14.00 88.00 102.00 OK

Check Details

Version: 2.2.3
Check: Rd files
Result: NOTE checkRd: (-1) parse_beast_output_files.Rd:23: Lost braces 23 | item{\code{estimates}: parameter estimates} | ^ checkRd: (-1) parse_beast_output_files.Rd:24-28: Lost braces 24 | item{ | ^ checkRd: (-1) parse_beast_output_files.Rd:29-31: Lost braces 29 | item{\code{operators}: the BEAST2 MCMC operator | ^ checkRd: (-1) parse_beast_posterior.Rd:28: Lost braces 28 | item{\code{estimates}: parameter estimates} | ^ checkRd: (-1) parse_beast_posterior.Rd:29-33: Lost braces 29 | item{ | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 2.2.3
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ggplot2', 'phangorn', 'reshape2', 'stringr', 'testthat' Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.2.3
Check: examples
Result: ERROR Running examples in ‘tracerer-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: is_posterior > ### Title: Determines if the input is a BEAST2 posterior > ### Aliases: is_posterior > > ### ** Examples > > trees_filename <- get_tracerer_path("beast2_example_output.trees") > tracelog_filename <- get_tracerer_path("beast2_example_output.log") > posterior <- parse_beast_posterior( + trees_filename = trees_filename, + tracelog_filename = tracelog_filename + ) Error in loadNamespace(x) : there is no package called ‘stringr’ Calls: parse_beast_posterior ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.2.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘demo.Rmd’ using rmarkdown Quitting from lines 76-82 [unnamed-chunk-5] (demo.Rmd) Error: processing vignette 'demo.Rmd' failed with diagnostics: there is no package called 'ggplot2' --- failed re-building ‘demo.Rmd’ SUMMARY: processing the following file failed: ‘demo.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc