MetaNet: Network Analysis for Omics Data

Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.

Version: 0.1.2
Depends: R (≥ 4.1.0), igraph (≥ 1.3.5)
Imports: graphics, dplyr, ggplot2 (≥ 3.2.0), ggnewscale, ggrepel, RColorBrewer, grDevices, magrittr, reshape2, stats, tibble, utils, pcutils (≥ 0.2.5), rlang
Suggests: pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr, rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3, ggpmisc, ggtree, treeio, circlize, ggpubr
Published: 2024-03-25
Author: Chen Peng ORCID iD [aut, cre]
Maintainer: Chen Peng <pengchen2001 at zju.edu.cn>
BugReports: https://github.com/Asa12138/MetaNet/issues
License: GPL-3
URL: https://github.com/Asa12138/MetaNet
NeedsCompilation: no
Materials: README NEWS
CRAN checks: MetaNet results

Documentation:

Reference manual: MetaNet.pdf
Vignettes: MetaNet

Downloads:

Package source: MetaNet_0.1.2.tar.gz
Windows binaries: r-devel: MetaNet_0.1.2.zip, r-release: MetaNet_0.1.2.zip, r-oldrel: MetaNet_0.1.2.zip
macOS binaries: r-release (arm64): MetaNet_0.1.2.tgz, r-oldrel (arm64): MetaNet_0.1.2.tgz, r-release (x86_64): MetaNet_0.1.2.tgz
Old sources: MetaNet archive

Reverse dependencies:

Reverse suggests: pctax, ReporterScore

Linking:

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