MetamapsDB: Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

Functions for path based queries against 'Omics' <https://github.com/etheleon/omics-neo4j-container>, a 'NEO4J' <https://neo4j.com/> database populated with data from metagenomic surveys and their accompanying metabolic and taxonomic annotations.

Version: 0.0.2
Depends: R (≥ 3.1.1)
Imports: IRanges, ShortRead, future, GenomicRanges, forcats, ggplot2, purrr, gridExtra, lubridate, zoo, magrittr, stats, utils, grDevices, parallel, RJSONIO, RCurl, igraph, rgexf, dplyr (≥ 0.3.0.1), Matrix (≥ 1.2-12), stringr, tidyr, shiny, base64enc, cluster, DBI, RSQLite, data.table, httr
Published: 2017-12-06
Author: Wesley GOI
Maintainer: Wesley GOI <wesley at bic.nus.edu.sg>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: MetamapsDB results

Downloads:

Reference manual: MetamapsDB.pdf
Package source: MetamapsDB_0.0.2.tar.gz
Windows binaries: r-devel: MetamapsDB_0.0.2.zip, r-release: MetamapsDB_0.0.2.zip, r-oldrel: MetamapsDB_0.0.2.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: MetamapsDB_0.0.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MetamapsDB to link to this page.