September 3rd, 2021 (1.6-2)
* link against RcppParallel to align with new Stan requirements
* address CRAN comments
May 28th, 2020 (1.6-1)
* stabilize elir ESS integration by integrating per mixture component
* comply with forthcoming and stricter stanc3 Stan transpiler
* address some warnings from ggplot2 3.3.0
March 27th, 2020 (1.6-0)
* fix CI system issues
* fix issues with normal decision2S_boundary when boundaries are grown
* add demo for 2S OC simulation code for time-to-event endpoint with
constant hazard assumption
* drop tidyverse dependency
* expand SBC checks to include group specifc estimates
* stop setting the ggplot2 default theme when loading package. All
plots now use the bayesplot theme which can be modified with
bayesplot_theme_* functions. See ?bayesplot::bayesplot_theme_get.
* correct transformation issue in MAP for variances vignette - thanks
to Ping Chen
* allow for constrained fitting of beta mixtures which have a & b
parameters greater than 1. This is the new default behavior which
the function will inform about. The informational message will be
removed in a future release.
* introduced new mixecdf plot as diagnostic for EM fits
October 22nd, 2019 (1.5-4)
* Now really fix n2=0 case for 2S design functions for indirect
comparisons
* Update package structure to new rstantools 2.0 system
August 28th, 2019 (1.5-3)
* Fix vignette MAP for variances (missing definition)
August 28th, 2019 (1.5-2)
* Speedup example run time
* Avoid use of cat in functions and use message instead
* Replace dontrun in examples with donttest
* Require NOT_CRAN=true for tests to run
August 28th, 2019 (1.5-1)
* Work around compiler warning with clang on fedora platform
August 15th, 2019 (1.5-0)
* Fix indirect comparisons to work with normal/Poisson/binomial
(inexact) to allow for n2=0 in oc2S calls.
* Make mixture quantile function more robust to work with very flat
mixture priors.
* Align ESS Morita calculations with Neuenschwander B. et al.,
_pre-print_ 2019; arXiv:1907.04185
July 27th, 2019 (1.4-0)
* Introduce elir ESS method as new default for ESS
* Allow to sample prior predictive with gMAP (argument prior_PD)
* Switch internally to ab parametrized version of EM beta algorithm
April 3nd, 2019 (1.3-8)
* Use Simulation Based Calibration for gMAP model qualification
* Improve covariate handling (naming of data items)
* Speedup Stan model by avoiding matrix-vector products with many zeros
* Fix index issue with differential discounting when used with covariates
* Make initialization of EM algorithms more robust
* Avoid special build hacks on MacOS
November 16th, 2018 (1.3-7)
* Address issue for build process on MacOS.
November 14th, 2018 (1.3-6)
* Re-create vignettes with proper MCMC sampling.
* Automate R package build process using CI/CD.
November 13th, 2018 (1.3-5)
* Corrected 1.3-4 release notes to include MAP for variances vignette
* Make build process more robust (updated src/Makevars{.win})
* Added probability of success at interim vignette
* Added probability of success with co-data vignette
October 16th, 2018 (1.3-4)
* Make package work with rstan 2.18.1.
* Revert BetaBinomial implementation back to R functions.
* Bugfix for decision1S_boundary for normal case for extreme parameter configurations (fixes pos1S & oc1S as well).
* Bugfix for mixcombine and plot with normal mixtures without a sigma being defined.
* Bugfix for repeated calls to decision2S_boundary for normal endpoint (fixes pos2S & oc2S as well).
* Avoid use of deprecated bayesplot function arguments whenever divergencies occured.
* (corrected) Added MAP for variances vignette
February 2nd, 2018 (1.3-3)
* Change numerical equality testing to use expect_equal (which uses
all.equal internally accounting for machine specifc tolerances) to
pass tests for no long double case. Numerical tolerances are
reverted back to 1.3-1 settings.
January 25th, 2018 (1.3-2)
* Adjust numerical tolerances to pass tests for no long double case
December 21st, 2017 (1.3-1)
* Add Trustees of Columbia copyright for respective files in
DESCRIPTION
December 21st, 2017 (1.3-0)
* Added probability of success calculation for 1+2 sample case.
* Added decision1+2S_boundary functions (and deprecated use of y2
argument of oc functions)
* Added RBesT.integrate_args option for greater control over density
integrations.
* Correct cumulative predictive of beta mixtures to return 0/1 for
out-of-range values (instead of leaving those out).
* Deprecated functions oc1+2Sdecision which are replaced by
decision1+2S.
August 21st, 2017 (1.2-3)
* Fix plotting procedures to work with bayesplot 1.3.0
July 12th, 2017 (1.2-2)
* Further speedup example runtimes.
July 12th, 2017 (1.2-1)
* Compactify reference PDF manual.
* Introduce sampling arguments to gMAP.
* Shorten runtime of examples.
July 3rd, 2017 (1.2-0)
* First CRAN release.
* Update of documentation.
May 15th, 2017 (1.1-0)
* Redesign of reference scale handling for normal case.
* Enable standard error as sufficient statistic in \code{postmix} function.
* Introduced plotting options.
* Increased adapt_delta default and set stepsize+max_treedepth default.
* Added RBesT.MC.\{ncp, init, rescale\} option.
* Corrections for Poisson OC.
* pmixdiff function now integrates over full support.
* Added \code{link} argument to \code{oc2Sdecision} which enables designs based on log-odds decisions or relative risks.
* New graphical vignette and new forest plot function.
* Use \pkg{bayesplot} as standard plotting package.
March 10th, 2016 (1.0-0)
* Stabilize integration in pmixdiff for beta mixtures by logit transform.
* Set default adapt_delta to 0.975.
* Made RBesT compatible with ggplot2 2.0.
* Allowed n2=0 in \code{oc2S} function.
Oct 28th 2015 (0.9-2)
* Corrected Poisson stratified estimates.
* Added warning on divergent transitions.
* Added the crohn dataset.
Sept 3rd 2015 (0.9-1)
* Minor typo fixes.
Sept 1st 2015 (0.9-0)
* First release.