TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST
Assists performing tip-dating of phylogenetic trees with BEAST
BEAST is a popular software for phylogenetic analysis.
The package assists the implementation of various phylogenetic tip-
dating tests using BEAST. It contains two main functions.
The first one allows preparing date randomization analyses,
which assess the temporal signal of a data set.
The second function allows performing leave-one-out analyses,
which test for the consistency between independent calibration sequences
and allow pinpointing those leading to potential bias.
The included tutorial provides detailed step-by-step instructions.
An expanded description of the package can be found in article:
Rieux, A. and Khatchikian, C.E. (2017),
TIPDATINGBEAST: an R package to assist the implementation of phylogenetic
tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613.
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