TrustVDJ: Tools for Immune Repertoire Analysis

A toolkit for read and prepare immune repertoire data. 'TrustVDJ' package focuses on the reading and processing of 'TRUST4' and '10x cellranger' software output results by using 'ReadTrust' and 'Read10x' functions, respectively, and also provides a convenience function 'build_IMGT_reference' to download the 'IMGT' database reference and split its sequences by species.

Version: 0.1.0
Imports: Biostrings, data.table, methods, rvest, stats
Suggests: R.utils
Published: 2022-03-16
Author: Lianhao Song ORCID iD [aut, cre]
Maintainer: Lianhao Song <hatsunecode at>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README NEWS
CRAN checks: TrustVDJ results


Reference manual: TrustVDJ.pdf


Package source: TrustVDJ_0.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): TrustVDJ_0.1.0.tgz, r-oldrel (arm64): TrustVDJ_0.1.0.tgz, r-release (x86_64): TrustVDJ_0.1.0.tgz, r-oldrel (x86_64): TrustVDJ_0.1.0.tgz


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