biocompute: Create and Manipulate BioCompute Objects

Tools to create, validate, and export BioCompute Objects described in King et al. (2019) <doi:10.17605/>. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.

Version: 1.1.1
Imports: methods, jsonlite, yaml, digest, uuid, jsonvalidate, httr, curl, crayon, cli, stringr, magrittr, rmarkdown
Suggests: knitr
Published: 2022-05-03
DOI: 10.32614/CRAN.package.biocompute
Author: Soner Koc ORCID iD [aut, cre], Jeffrey Grover ORCID iD [aut], Nan Xiao ORCID iD [aut], Dennis Dean ORCID iD [aut], Seven Bridges Genomics [cph, fnd]
Maintainer: Soner Koc <soner.koc at>
License: AGPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: biocompute results


Reference manual: biocompute.pdf
Vignettes: Authoring Biocompute Objects with R: A Case Study
An Introduction to BioCompute Objects with R


Package source: biocompute_1.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): biocompute_1.1.1.tgz, r-oldrel (arm64): biocompute_1.1.1.tgz, r-release (x86_64): biocompute_1.1.1.tgz, r-oldrel (x86_64): biocompute_1.1.1.tgz
Old sources: biocompute archive


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