imcExperiment: Mass Cytometry S4 Class Structure Pipeline for Images

Containerizes cytometry data and allows for S4 class structure to extend slots related to cell morphology, spatial coordinates, phenotype network information, and unique cellular labeling.

Version: 0.99.0
Depends: R (≥ 4.0), SingleCellExperiment, methods
Imports: SummarizedExperiment, S4Vectors, spatstat.geom, stats
Suggests: knitr, rmarkdown
Published: 2021-08-19
DOI: 10.32614/CRAN.package.imcExperiment
Author: Anthony Colombo [aut, cre]
Maintainer: Anthony Colombo <anthonycolombo60 at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: imcExperiment results


Reference manual: imcExperiment.pdf
Vignettes: imcExperiment: containerization of IMC data


Package source: imcExperiment_0.99.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): imcExperiment_0.99.0.tgz, r-oldrel (arm64): imcExperiment_0.99.0.tgz, r-release (x86_64): imcExperiment_0.99.0.tgz, r-oldrel (x86_64): imcExperiment_0.99.0.tgz


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