poppr: Genetic Analysis of Populations with Mixed Reproduction

Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.

Version: 2.9.3
Depends: R (≥ 2.15.1), adegenet (≥ 2.0.0)
Imports: stats, graphics, grDevices, utils, vegan, ggplot2, ape (≥ 3.1-1), igraph (≥ 1.0.0), methods, ade4, pegas, polysat, dplyr (≥ 0.4), rlang, boot, shiny, magrittr, progressr
Suggests: testthat, knitr, rmarkdown, poweRlaw, cowplot, RClone
Published: 2021-09-07
Author: Zhian N. Kamvar ORCID iD [cre, aut], Javier F. Tabima ORCID iD [aut], Sydney E. Everhart ORCID iD [ctb, dtc], Jonah C. Brooks [aut], Stacy A. Krueger-Hadfield ORCID iD [ctb], Erik Sotka [ctb], Brian J. Knaus ORCID iD [ctb], Patrick G. Meirmans ORCID iD [ctb], Frédéric D. Chevalier ORCID iD [ctb], David Folarin [aut], Niklaus J. Grünwald ORCID iD [ths]
Maintainer: Zhian N. Kamvar <zkamvar at gmail.com>
MailingList: https://groups.google.com/d/forum/poppr
BugReports: https://github.com/grunwaldlab/poppr/issues/
License: GPL-2 | GPL-3
URL: https://grunwaldlab.github.io/poppr/, https://github.com/grunwaldlab/poppr/, https://grunwaldlab.github.io/Population_Genetics_in_R/
NeedsCompilation: yes
Citation: poppr citation info
Materials: README NEWS
CRAN checks: poppr results

Downloads:

Reference manual: poppr.pdf
Vignettes: Algorightms and Equations
Package source: poppr_2.9.3.tar.gz
Windows binaries: r-devel: poppr_2.9.3.zip, r-devel-UCRT: poppr_2.9.3.zip, r-release: poppr_2.9.3.zip, r-oldrel: poppr_2.9.3.zip
macOS binaries: r-release (arm64): poppr_2.9.3.tgz, r-release (x86_64): poppr_2.9.3.tgz, r-oldrel: poppr_2.9.3.tgz
Old sources: poppr archive

Reverse dependencies:

Reverse suggests: adegenet, AlleleShift, dartR, vcfR

Linking:

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