protr: Generating Various Numerical Representation Schemes for Protein Sequences

Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <> for more information.

Version: 1.7-1
Depends: R (≥ 3.0.2)
Suggests: knitr, rmarkdown, Biostrings, GOSemSim, foreach, doParallel,
Published: 2024-04-20
DOI: 10.32614/CRAN.package.protr
Author: Nan Xiao ORCID iD [aut, cre], Qing-Song Xu [aut], Dong-Sheng Cao [aut], Sebastian Mueller [ctb] (Alva Genomics)
Maintainer: Nan Xiao <me at>
License: BSD_3_clause + file LICENSE
NeedsCompilation: no
SystemRequirements: ncbi-blast+ (see <>)
Citation: protr citation info
Materials: README NEWS
CRAN checks: protr results


Reference manual: protr.pdf
Vignettes: protr: R package for generating various numerical representation schemes of protein sequences


Package source: protr_1.7-1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): protr_1.7-1.tgz, r-oldrel (arm64): protr_1.7-1.tgz, r-release (x86_64): protr_1.7-1.tgz, r-oldrel (x86_64): protr_1.7-1.tgz
Old sources: protr archive

Reverse dependencies:

Reverse imports: HPiP, PredCRG, surfaltr


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